miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11437 3' -60.1 NC_003085.1 + 9869 0.67 0.398372
Target:  5'- gCGCUC-CGCGacGCGCUCCagcuugccagugGCGCCGUa -3'
miRNA:   3'- aGUGAGuGUGC--CGUGGGGa-----------CGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 10127 0.66 0.446463
Target:  5'- -uGCUCGCAgCGGacUACCgcgaaCUGCGCgGCg -3'
miRNA:   3'- agUGAGUGU-GCC--GUGGg----GACGCGgCG- -5'
11437 3' -60.1 NC_003085.1 + 10454 0.66 0.418315
Target:  5'- -gGCUC-CGCGGCGCUUUgGCGCCc- -3'
miRNA:   3'- agUGAGuGUGCCGUGGGGaCGCGGcg -5'
11437 3' -60.1 NC_003085.1 + 11351 0.67 0.360366
Target:  5'- cUCACggCAcCuccgagacgauggugGCGGCGCCggacaCCUGCGCUGCc -3'
miRNA:   3'- -AGUGa-GU-G---------------UGCCGUGG-----GGACGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 12604 0.7 0.229818
Target:  5'- -gACUgACGCgcguGGCGCCCCggGCGCUGg -3'
miRNA:   3'- agUGAgUGUG----CCGUGGGGa-CGCGGCg -5'
11437 3' -60.1 NC_003085.1 + 13278 0.66 0.446463
Target:  5'- gCGCUcCGCACGGCgaacaucggagGCCCCaGCGa-GCc -3'
miRNA:   3'- aGUGA-GUGUGCCG-----------UGGGGaCGCggCG- -5'
11437 3' -60.1 NC_003085.1 + 14120 0.67 0.365397
Target:  5'- cCACUgC-CACGGCAUCaCC-GUGCUGCc -3'
miRNA:   3'- aGUGA-GuGUGCCGUGG-GGaCGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 14960 0.68 0.331989
Target:  5'- gUCGC-CGCACGGUccgugguGCCCUgggagGCGCCcCa -3'
miRNA:   3'- -AGUGaGUGUGCCG-------UGGGGa----CGCGGcG- -5'
11437 3' -60.1 NC_003085.1 + 15176 0.68 0.348815
Target:  5'- gCGCUgACGgcccggcugagcCGGUGCgCCaGCGCCGCg -3'
miRNA:   3'- aGUGAgUGU------------GCCGUGgGGaCGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 15355 0.66 0.427578
Target:  5'- -aACUgCAUGCGGUGgCCCUGaCGCCa- -3'
miRNA:   3'- agUGA-GUGUGCCGUgGGGAC-GCGGcg -5'
11437 3' -60.1 NC_003085.1 + 15425 0.7 0.229818
Target:  5'- uUCACUgaggcugugggaCGCgaGCGGUAUCCCUGaaucauCGCCGCg -3'
miRNA:   3'- -AGUGA------------GUG--UGCCGUGGGGAC------GCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 16225 0.67 0.363715
Target:  5'- cUC-CUCAuCGCGGCuggcgucgucauCCUcgugCUGCGCCGCc -3'
miRNA:   3'- -AGuGAGU-GUGCCGu-----------GGG----GACGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 17224 0.73 0.158444
Target:  5'- cCGCUggugagCACGCGGCGCCCCgugcucugggcgGUGuuGCg -3'
miRNA:   3'- aGUGA------GUGUGCCGUGGGGa-----------CGCggCG- -5'
11437 3' -60.1 NC_003085.1 + 17808 0.68 0.309746
Target:  5'- cCGCcCGCccCGGUGCCgCCUGUGCgGCa -3'
miRNA:   3'- aGUGaGUGu-GCCGUGG-GGACGCGgCG- -5'
11437 3' -60.1 NC_003085.1 + 18293 0.67 0.357039
Target:  5'- cCAC-CGgGCGGUgcacGCCCCgGCGCUGg -3'
miRNA:   3'- aGUGaGUgUGCCG----UGGGGaCGCGGCg -5'
11437 3' -60.1 NC_003085.1 + 18634 0.66 0.456078
Target:  5'- gUUGCU-GCugGGUugCCUUGuCGcCCGCg -3'
miRNA:   3'- -AGUGAgUGugCCGugGGGAC-GC-GGCG- -5'
11437 3' -60.1 NC_003085.1 + 18735 0.66 0.436018
Target:  5'- uUCuuCUCGUugGGaCGccgguccgcuuccCCCUUGCGCCGCu -3'
miRNA:   3'- -AGu-GAGUGugCC-GU-------------GGGGACGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 19058 0.7 0.23396
Target:  5'- cCGCggCGCGCGGCggagcaggcgccggGCCCggacggagUGCGCCGCa -3'
miRNA:   3'- aGUGa-GUGUGCCG--------------UGGGg-------ACGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 20079 0.66 0.446463
Target:  5'- cCGCUUcCACGcGCGCUgUgacGUGCCGCa -3'
miRNA:   3'- aGUGAGuGUGC-CGUGGgGa--CGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 20339 0.69 0.28795
Target:  5'- -aACUCugggcCACGGCGCCUCaGCGCgggaGCg -3'
miRNA:   3'- agUGAGu----GUGCCGUGGGGaCGCGg---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.