miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11437 3' -60.1 NC_003085.1 + 713 0.69 0.267378
Target:  5'- -aACUcCGCGUGGCGCCUgacGCGCCGCu -3'
miRNA:   3'- agUGA-GUGUGCCGUGGGga-CGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 1201 0.67 0.40016
Target:  5'- cCAUUgACcaACcuCACCCCgGCGCCGCg -3'
miRNA:   3'- aGUGAgUG--UGccGUGGGGaCGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 2294 0.7 0.229231
Target:  5'- -gGCUCcggcaGCACGGCGCUggCCUGCcucgccaccggccGCCGCu -3'
miRNA:   3'- agUGAG-----UGUGCCGUGG--GGACG-------------CGGCG- -5'
11437 3' -60.1 NC_003085.1 + 2493 0.71 0.207866
Target:  5'- aCGCUCAaggcguggcugacggACGGUgugcccgcgucgGCCCCUGCGCgCGCc -3'
miRNA:   3'- aGUGAGUg--------------UGCCG------------UGGGGACGCG-GCG- -5'
11437 3' -60.1 NC_003085.1 + 3473 0.66 0.456078
Target:  5'- gCAC-CAuCACGGCgACgUCUGCGUCGa -3'
miRNA:   3'- aGUGaGU-GUGCCG-UGgGGACGCGGCg -5'
11437 3' -60.1 NC_003085.1 + 3564 0.72 0.181912
Target:  5'- -gGCgCACACGGCGacaCCUGCGCCuGUg -3'
miRNA:   3'- agUGaGUGUGCCGUgg-GGACGCGG-CG- -5'
11437 3' -60.1 NC_003085.1 + 3684 0.69 0.302343
Target:  5'- -gACg-GCGCGGCGagUCCUGaCGCCGCg -3'
miRNA:   3'- agUGagUGUGCCGUg-GGGAC-GCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 3889 0.67 0.365397
Target:  5'- gUCugUCGCgguGGCACUgCUcGUGCUGCg -3'
miRNA:   3'- -AGugAGUGug-CCGUGGgGA-CGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 4120 0.72 0.177172
Target:  5'- gCGC-CGCGCuGGgACUCCaGCGCCGCu -3'
miRNA:   3'- aGUGaGUGUG-CCgUGGGGaCGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 6001 0.66 0.436018
Target:  5'- -gGCUCGCcuACGGCugggcgcggauguACgCCCgGaCGCCGCg -3'
miRNA:   3'- agUGAGUG--UGCCG-------------UG-GGGaC-GCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 6016 0.78 0.062275
Target:  5'- aUCGCUCagcaGCGCGGCACCCCUcacgacgacGCGaCGCu -3'
miRNA:   3'- -AGUGAG----UGUGCCGUGGGGA---------CGCgGCG- -5'
11437 3' -60.1 NC_003085.1 + 7345 0.75 0.111935
Target:  5'- aCGCgggcUACAC-GCGCCCCUggGCGCCGCu -3'
miRNA:   3'- aGUGa---GUGUGcCGUGGGGA--CGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 7647 0.7 0.254334
Target:  5'- gCGCUUGgGCGGCGCCgacaugcgcgagCCUGUGCUGg -3'
miRNA:   3'- aGUGAGUgUGCCGUGG------------GGACGCGGCg -5'
11437 3' -60.1 NC_003085.1 + 7988 0.68 0.324962
Target:  5'- gCGCUgGCGCGGUACUucaCCcGCGCCcCa -3'
miRNA:   3'- aGUGAgUGUGCCGUGG---GGaCGCGGcG- -5'
11437 3' -60.1 NC_003085.1 + 8389 0.7 0.241817
Target:  5'- cCGCUCGCucauCGGCAgCCCCca-GUCGCg -3'
miRNA:   3'- aGUGAGUGu---GCCGU-GGGGacgCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 8473 0.68 0.317285
Target:  5'- aCGC-CGCugGGCcaGCCCUUGcCGCUuGCg -3'
miRNA:   3'- aGUGaGUGugCCG--UGGGGAC-GCGG-CG- -5'
11437 3' -60.1 NC_003085.1 + 8765 0.67 0.357039
Target:  5'- gCGCguccagCACcCGGaCGucgucCCCCUGCGCCGg -3'
miRNA:   3'- aGUGa-----GUGuGCC-GU-----GGGGACGCGGCg -5'
11437 3' -60.1 NC_003085.1 + 9188 0.66 0.409175
Target:  5'- -gGgUCgGCGCgGGUACUCCUGCGCCc- -3'
miRNA:   3'- agUgAG-UGUG-CCGUGGGGACGCGGcg -5'
11437 3' -60.1 NC_003085.1 + 9719 0.68 0.315766
Target:  5'- cUC-CUCACGguccuucCGGCGCugguccucauccaCCUUGCGCUGCg -3'
miRNA:   3'- -AGuGAGUGU-------GCCGUG-------------GGGACGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 9804 0.7 0.229818
Target:  5'- -uGCUCACGCGcGCGCCgCUcggUGuCGUCGCg -3'
miRNA:   3'- agUGAGUGUGC-CGUGG-GG---AC-GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.