miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11437 3' -60.1 NC_003085.1 + 41127 0.68 0.317285
Target:  5'- -gGCcgaGCGCGGCACCCCguacUGCugGCCGg -3'
miRNA:   3'- agUGag-UGUGCCGUGGGG----ACG--CGGCg -5'
11437 3' -60.1 NC_003085.1 + 48807 0.7 0.229818
Target:  5'- -gGCUCACgGCaGCACCUCUuucGCGCCGa -3'
miRNA:   3'- agUGAGUG-UGcCGUGGGGA---CGCGGCg -5'
11437 3' -60.1 NC_003085.1 + 19058 0.7 0.23396
Target:  5'- cCGCggCGCGCGGCggagcaggcgccggGCCCggacggagUGCGCCGCa -3'
miRNA:   3'- aGUGa-GUGUGCCG--------------UGGGg-------ACGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 44382 0.7 0.26079
Target:  5'- aCugUCGCuCGGgcuguucguCAUCCC-GCGCCGCa -3'
miRNA:   3'- aGugAGUGuGCC---------GUGGGGaCGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 45569 0.69 0.280957
Target:  5'- cUCGCgcaGCGCGGC-CUCaaUGCGCUGCa -3'
miRNA:   3'- -AGUGag-UGUGCCGuGGGg-ACGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 20339 0.69 0.28795
Target:  5'- -aACUCugggcCACGGCGCCUCaGCGCgggaGCg -3'
miRNA:   3'- agUGAGu----GUGCCGUGGGGaCGCGg---CG- -5'
11437 3' -60.1 NC_003085.1 + 26749 0.69 0.28795
Target:  5'- gUCACUCAacCGGCGgCCCUuCGCCa- -3'
miRNA:   3'- -AGUGAGUguGCCGUgGGGAcGCGGcg -5'
11437 3' -60.1 NC_003085.1 + 46815 0.68 0.309746
Target:  5'- gUC-CUUGgGCGGCAUCaCCU-CGCCGCc -3'
miRNA:   3'- -AGuGAGUgUGCCGUGG-GGAcGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 17808 0.68 0.309746
Target:  5'- cCGCcCGCccCGGUGCCgCCUGUGCgGCa -3'
miRNA:   3'- aGUGaGUGu-GCCGUGG-GGACGCGgCG- -5'
11437 3' -60.1 NC_003085.1 + 12604 0.7 0.229818
Target:  5'- -gACUgACGCgcguGGCGCCCCggGCGCUGg -3'
miRNA:   3'- agUGAgUGUG----CCGUGGGGa-CGCGGCg -5'
11437 3' -60.1 NC_003085.1 + 15425 0.7 0.229818
Target:  5'- uUCACUgaggcugugggaCGCgaGCGGUAUCCCUGaaucauCGCCGCg -3'
miRNA:   3'- -AGUGA------------GUG--UGCCGUGGGGAC------GCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 2294 0.7 0.229231
Target:  5'- -gGCUCcggcaGCACGGCGCUggCCUGCcucgccaccggccGCCGCu -3'
miRNA:   3'- agUGAG-----UGUGCCGUGG--GGACG-------------CGGCG- -5'
11437 3' -60.1 NC_003085.1 + 7345 0.75 0.111935
Target:  5'- aCGCgggcUACAC-GCGCCCCUggGCGCCGCu -3'
miRNA:   3'- aGUGa---GUGUGcCGUGGGGA--CGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 33102 0.74 0.128002
Target:  5'- cUCACUC-CugGGUggcgcugucgaacGCuCCCUaGCGCCGCa -3'
miRNA:   3'- -AGUGAGuGugCCG-------------UG-GGGA-CGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 38008 0.73 0.143059
Target:  5'- aCGCUCACACcGCgucgGCCCCaacgGCGaCCGCu -3'
miRNA:   3'- aGUGAGUGUGcCG----UGGGGa---CGC-GGCG- -5'
11437 3' -60.1 NC_003085.1 + 4120 0.72 0.177172
Target:  5'- gCGC-CGCGCuGGgACUCCaGCGCCGCu -3'
miRNA:   3'- aGUGaGUGUG-CCgUGGGGaCGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 30248 0.72 0.181912
Target:  5'- --cCUUGCGCGGCGCCCagccccCGCCGCc -3'
miRNA:   3'- aguGAGUGUGCCGUGGGgac---GCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 40781 0.72 0.186764
Target:  5'- -gACguuggCGgACGGCACCCCgGCGCC-Ca -3'
miRNA:   3'- agUGa----GUgUGCCGUGGGGaCGCGGcG- -5'
11437 3' -60.1 NC_003085.1 + 43963 0.72 0.19173
Target:  5'- -uGCUCccuCACGGCccgGCCCCa-CGCCGCg -3'
miRNA:   3'- agUGAGu--GUGCCG---UGGGGacGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 48882 0.71 0.218325
Target:  5'- gUCGCcgCACACGGagcaUugCCCgccagccGCGCCGCc -3'
miRNA:   3'- -AGUGa-GUGUGCC----GugGGGa------CGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.