Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11438 | 3' | -58.4 | NC_003085.1 | + | 33534 | 1.08 | 0.000521 |
Target: 5'- cCGAGCCUGUCACACGCCGUCCACGCAc -3' miRNA: 3'- -GCUCGGACAGUGUGCGGCAGGUGCGU- -5' |
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11438 | 3' | -58.4 | NC_003085.1 | + | 35865 | 0.67 | 0.469856 |
Target: 5'- uGuGCCUuggcGUCaugGCGCGCCuccggugcccacGUCCACGCGc -3' miRNA: 3'- gCuCGGA----CAG---UGUGCGG------------CAGGUGCGU- -5' |
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11438 | 3' | -58.4 | NC_003085.1 | + | 36699 | 0.69 | 0.376602 |
Target: 5'- cCGGGCCUGacugCACAUa--GUCCACGCc -3' miRNA: 3'- -GCUCGGACa---GUGUGcggCAGGUGCGu -5' |
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11438 | 3' | -58.4 | NC_003085.1 | + | 38339 | 0.69 | 0.342955 |
Target: 5'- uCGGGCCUGgCACGCGCaacuUCCugGgCAc -3' miRNA: 3'- -GCUCGGACaGUGUGCGgc--AGGugC-GU- -5' |
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11438 | 3' | -58.4 | NC_003085.1 | + | 39517 | 0.7 | 0.319175 |
Target: 5'- --cGCCUcGUCGCugGCauCGUCCugGCc -3' miRNA: 3'- gcuCGGA-CAGUGugCG--GCAGGugCGu -5' |
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11438 | 3' | -58.4 | NC_003085.1 | + | 40122 | 0.66 | 0.500072 |
Target: 5'- -cGGCUgcugGUC-CugGCCG-CCGCGCGu -3' miRNA: 3'- gcUCGGa---CAGuGugCGGCaGGUGCGU- -5' |
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11438 | 3' | -58.4 | NC_003085.1 | + | 40613 | 0.68 | 0.402351 |
Target: 5'- gGGGCCUGUgCugACggccgcuGCCGUCCucguCGCc -3' miRNA: 3'- gCUCGGACA-GugUG-------CGGCAGGu---GCGu -5' |
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11438 | 3' | -58.4 | NC_003085.1 | + | 42217 | 0.71 | 0.275389 |
Target: 5'- aGAGCCUGUCccCGgGCUGUCCguaggggcaGCGCu -3' miRNA: 3'- gCUCGGACAGu-GUgCGGCAGG---------UGCGu -5' |
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11438 | 3' | -58.4 | NC_003085.1 | + | 45845 | 0.71 | 0.268576 |
Target: 5'- -cAGCCaGUCGCgGCGCaCGUCCAgGCGg -3' miRNA: 3'- gcUCGGaCAGUG-UGCG-GCAGGUgCGU- -5' |
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11438 | 3' | -58.4 | NC_003085.1 | + | 48735 | 0.67 | 0.479827 |
Target: 5'- --cGCCUGUCcgugagcgGCGCGUCaGgcgCCACGCGg -3' miRNA: 3'- gcuCGGACAG--------UGUGCGG-Ca--GGUGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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