Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11438 | 3' | -58.4 | NC_003085.1 | + | 19931 | 0.68 | 0.403259 |
Target: 5'- -uGGCCUGcCACugGCCcauGUUCGCGUu -3' miRNA: 3'- gcUCGGACaGUGugCGG---CAGGUGCGu -5' |
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11438 | 3' | -58.4 | NC_003085.1 | + | 4671 | 0.68 | 0.403259 |
Target: 5'- gCGAGCCUuUCACgGCGCCGagUUGCGCc -3' miRNA: 3'- -GCUCGGAcAGUG-UGCGGCa-GGUGCGu -5' |
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11438 | 3' | -58.4 | NC_003085.1 | + | 12376 | 0.67 | 0.440599 |
Target: 5'- gGAGCgacu-GCGCGCCGUCCACcuGCAu -3' miRNA: 3'- gCUCGgacagUGUGCGGCAGGUG--CGU- -5' |
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11438 | 3' | -58.4 | NC_003085.1 | + | 14735 | 0.67 | 0.449269 |
Target: 5'- gCGAuGCCaucgguaUGcCACGCGCCGccguggCCAUGCAa -3' miRNA: 3'- -GCU-CGG-------ACaGUGUGCGGCa-----GGUGCGU- -5' |
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11438 | 3' | -58.4 | NC_003085.1 | + | 22878 | 0.67 | 0.459992 |
Target: 5'- aGAGCgUGUCGC-CGCCGgacUCCgguGCGUc -3' miRNA: 3'- gCUCGgACAGUGuGCGGC---AGG---UGCGu -5' |
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11438 | 3' | -58.4 | NC_003085.1 | + | 35865 | 0.67 | 0.469856 |
Target: 5'- uGuGCCUuggcGUCaugGCGCGCCuccggugcccacGUCCACGCGc -3' miRNA: 3'- gCuCGGA----CAG---UGUGCGG------------CAGGUGCGU- -5' |
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11438 | 3' | -58.4 | NC_003085.1 | + | 26507 | 0.66 | 0.489901 |
Target: 5'- uGGGCCgGcucguccggcuUCGCcguCGCCGUCgACGCGg -3' miRNA: 3'- gCUCGGaC-----------AGUGu--GCGGCAGgUGCGU- -5' |
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11438 | 3' | -58.4 | NC_003085.1 | + | 12932 | 0.66 | 0.520686 |
Target: 5'- gCGGG-CUGUCAguCGCCGUCgcuaUACGUg -3' miRNA: 3'- -GCUCgGACAGUguGCGGCAG----GUGCGu -5' |
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11438 | 3' | -58.4 | NC_003085.1 | + | 22778 | 0.66 | 0.531118 |
Target: 5'- aGuGCCuUGUCGua-GUCGUCCugGCAc -3' miRNA: 3'- gCuCGG-ACAGUgugCGGCAGGugCGU- -5' |
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11438 | 3' | -58.4 | NC_003085.1 | + | 33534 | 1.08 | 0.000521 |
Target: 5'- cCGAGCCUGUCACACGCCGUCCACGCAc -3' miRNA: 3'- -GCUCGGACAGUGUGCGGCAGGUGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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