miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11438 5' -54 NC_003085.1 + 2204 0.67 0.710625
Target:  5'- --cGCGUGGCGGacgGUgacGCCuGAGCa -3'
miRNA:   3'- guaCGCGCCGCUguaCAa--CGGcUUCG- -5'
11438 5' -54 NC_003085.1 + 28315 0.67 0.699635
Target:  5'- gGUGCGCGGUGGgAcgGgcGUgGGAGUg -3'
miRNA:   3'- gUACGCGCCGCUgUa-CaaCGgCUUCG- -5'
11438 5' -54 NC_003085.1 + 24821 0.67 0.699635
Target:  5'- --cGCGCGGCuuuCAaccagGacGCCGAGGCg -3'
miRNA:   3'- guaCGCGCCGcu-GUa----CaaCGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 47494 0.67 0.688576
Target:  5'- uCAUGCacGCGGCGGaaccUGUcggUGgCGAAGCc -3'
miRNA:   3'- -GUACG--CGCCGCUgu--ACA---ACgGCUUCG- -5'
11438 5' -54 NC_003085.1 + 14930 0.67 0.688576
Target:  5'- --gGCGCucGCGGCcgcuGUGUUGCUGAcGCu -3'
miRNA:   3'- guaCGCGc-CGCUG----UACAACGGCUuCG- -5'
11438 5' -54 NC_003085.1 + 20649 0.67 0.677461
Target:  5'- gAUGaCGUGGCucGCGUcgcgucggaGUUGCUGGAGCg -3'
miRNA:   3'- gUAC-GCGCCGc-UGUA---------CAACGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 12237 0.67 0.6663
Target:  5'- --aGCGCGGCGGCugg--GCCGccagaauugaAGGCc -3'
miRNA:   3'- guaCGCGCCGCUGuacaaCGGC----------UUCG- -5'
11438 5' -54 NC_003085.1 + 27615 0.67 0.6663
Target:  5'- -cUGCGCGGUG-UGUGgaGCCuggGggGCu -3'
miRNA:   3'- guACGCGCCGCuGUACaaCGG---CuuCG- -5'
11438 5' -54 NC_003085.1 + 47354 0.67 0.655107
Target:  5'- cCAUGCGU-GCGACAaGcUGUCGAGGa -3'
miRNA:   3'- -GUACGCGcCGCUGUaCaACGGCUUCg -5'
11438 5' -54 NC_003085.1 + 2656 0.67 0.655107
Target:  5'- cCGUG-GUGGCGuCAcGUUGuaCCGggGCa -3'
miRNA:   3'- -GUACgCGCCGCuGUaCAAC--GGCuuCG- -5'
11438 5' -54 NC_003085.1 + 28050 0.67 0.655107
Target:  5'- -cUGCGCGGCcucgGACAgcagGcgGCCGAuGGUg -3'
miRNA:   3'- guACGCGCCG----CUGUa---CaaCGGCU-UCG- -5'
11438 5' -54 NC_003085.1 + 19064 0.67 0.655107
Target:  5'- --cGCGCGGCGgaGCA-GgcGCCG-GGCc -3'
miRNA:   3'- guaCGCGCCGC--UGUaCaaCGGCuUCG- -5'
11438 5' -54 NC_003085.1 + 7512 0.68 0.642769
Target:  5'- gGUGCGUcucgguGGCGGCAaGUggggccaUGCCGuGGGCa -3'
miRNA:   3'- gUACGCG------CCGCUGUaCA-------ACGGC-UUCG- -5'
11438 5' -54 NC_003085.1 + 45117 0.68 0.632665
Target:  5'- --cGCGCGGCGuagGCAU--UGCCGucGUc -3'
miRNA:   3'- guaCGCGCCGC---UGUAcaACGGCuuCG- -5'
11438 5' -54 NC_003085.1 + 18235 0.68 0.632665
Target:  5'- --cGCGCucaGGCGACAcGccgaUGuCCGAGGCg -3'
miRNA:   3'- guaCGCG---CCGCUGUaCa---AC-GGCUUCG- -5'
11438 5' -54 NC_003085.1 + 46009 0.68 0.632665
Target:  5'- gGUGCuCGGCGuACGUGgucgccUGCuCGAAGUu -3'
miRNA:   3'- gUACGcGCCGC-UGUACa-----ACG-GCUUCG- -5'
11438 5' -54 NC_003085.1 + 10494 0.68 0.610221
Target:  5'- -cUGCGCGGCGcAC-UGgagaauccGCgGAAGCg -3'
miRNA:   3'- guACGCGCCGC-UGuACaa------CGgCUUCG- -5'
11438 5' -54 NC_003085.1 + 19704 0.68 0.610221
Target:  5'- --cGCGCGGCGGCAUc-UGCaccuucGAGCa -3'
miRNA:   3'- guaCGCGCCGCUGUAcaACGgc----UUCG- -5'
11438 5' -54 NC_003085.1 + 48387 0.68 0.599023
Target:  5'- --aGCGCGGCGAgCAgcgccgcauUGUcUGCCucGGCg -3'
miRNA:   3'- guaCGCGCCGCU-GU---------ACA-ACGGcuUCG- -5'
11438 5' -54 NC_003085.1 + 34517 0.69 0.581172
Target:  5'- --cGUGCGGCGACAgcgucagcaacacaGcgGCCGcGAGCg -3'
miRNA:   3'- guaCGCGCCGCUGUa-------------CaaCGGC-UUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.