miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11438 5' -54 NC_003085.1 + 17938 0.7 0.511229
Target:  5'- --aGCGCGGCG-CucUGggcucUGCUGggGCa -3'
miRNA:   3'- guaCGCGCCGCuGu-ACa----ACGGCuuCG- -5'
11438 5' -54 NC_003085.1 + 23567 0.7 0.511229
Target:  5'- --gGCGCGGCGuuGCgAUGUcGCUGGAGg -3'
miRNA:   3'- guaCGCGCCGC--UG-UACAaCGGCUUCg -5'
11438 5' -54 NC_003085.1 + 5614 0.7 0.521954
Target:  5'- aGUGaCGCGGUggugGACggGcUGCUGGAGCg -3'
miRNA:   3'- gUAC-GCGCCG----CUGuaCaACGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 40426 0.7 0.521954
Target:  5'- cCGUGCagccGCGGUGugGUGUggaagaGCCG-GGCg -3'
miRNA:   3'- -GUACG----CGCCGCugUACAa-----CGGCuUCG- -5'
11438 5' -54 NC_003085.1 + 1585 0.7 0.532765
Target:  5'- --gGCGCGGCGuACGcg-UGCCGuguGCa -3'
miRNA:   3'- guaCGCGCCGC-UGUacaACGGCuu-CG- -5'
11438 5' -54 NC_003085.1 + 15848 0.69 0.543655
Target:  5'- gGUGCaaGGCGAUugaGUUgagcGCCGAAGCc -3'
miRNA:   3'- gUACGcgCCGCUGua-CAA----CGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 46400 0.69 0.554617
Target:  5'- uGUGCGCGGUGACAUcgcaGUgGUCu-GGCg -3'
miRNA:   3'- gUACGCGCCGCUGUA----CAaCGGcuUCG- -5'
11438 5' -54 NC_003085.1 + 3623 0.69 0.565643
Target:  5'- aCGUGCGCcGCGAC-UGgcugGCCGAGa- -3'
miRNA:   3'- -GUACGCGcCGCUGuACaa--CGGCUUcg -5'
11438 5' -54 NC_003085.1 + 16059 0.69 0.575615
Target:  5'- aCGUGCGCcacgacgGGCGuCAUGUUG-CGAcaguGGCu -3'
miRNA:   3'- -GUACGCG-------CCGCuGUACAACgGCU----UCG- -5'
11438 5' -54 NC_003085.1 + 43212 0.69 0.576725
Target:  5'- ----gGCGGCGuCGUGUaggcgucgaccaUGUCGGAGCg -3'
miRNA:   3'- guacgCGCCGCuGUACA------------ACGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 25820 0.69 0.576725
Target:  5'- -cUGCGCGGCcuGCucgcGcUGCUGAAGCa -3'
miRNA:   3'- guACGCGCCGc-UGua--CaACGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 34517 0.69 0.581172
Target:  5'- --cGUGCGGCGACAgcgucagcaacacaGcgGCCGcGAGCg -3'
miRNA:   3'- guaCGCGCCGCUGUa-------------CaaCGGC-UUCG- -5'
11438 5' -54 NC_003085.1 + 48387 0.68 0.599023
Target:  5'- --aGCGCGGCGAgCAgcgccgcauUGUcUGCCucGGCg -3'
miRNA:   3'- guaCGCGCCGCU-GU---------ACA-ACGGcuUCG- -5'
11438 5' -54 NC_003085.1 + 10494 0.68 0.610221
Target:  5'- -cUGCGCGGCGcAC-UGgagaauccGCgGAAGCg -3'
miRNA:   3'- guACGCGCCGC-UGuACaa------CGgCUUCG- -5'
11438 5' -54 NC_003085.1 + 19704 0.68 0.610221
Target:  5'- --cGCGCGGCGGCAUc-UGCaccuucGAGCa -3'
miRNA:   3'- guaCGCGCCGCUGUAcaACGgc----UUCG- -5'
11438 5' -54 NC_003085.1 + 45117 0.68 0.632665
Target:  5'- --cGCGCGGCGuagGCAU--UGCCGucGUc -3'
miRNA:   3'- guaCGCGCCGC---UGUAcaACGGCuuCG- -5'
11438 5' -54 NC_003085.1 + 46009 0.68 0.632665
Target:  5'- gGUGCuCGGCGuACGUGgucgccUGCuCGAAGUu -3'
miRNA:   3'- gUACGcGCCGC-UGUACa-----ACG-GCUUCG- -5'
11438 5' -54 NC_003085.1 + 18235 0.68 0.632665
Target:  5'- --cGCGCucaGGCGACAcGccgaUGuCCGAGGCg -3'
miRNA:   3'- guaCGCG---CCGCUGUaCa---AC-GGCUUCG- -5'
11438 5' -54 NC_003085.1 + 7512 0.68 0.642769
Target:  5'- gGUGCGUcucgguGGCGGCAaGUggggccaUGCCGuGGGCa -3'
miRNA:   3'- gUACGCG------CCGCUGUaCA-------ACGGC-UUCG- -5'
11438 5' -54 NC_003085.1 + 2656 0.67 0.655107
Target:  5'- cCGUG-GUGGCGuCAcGUUGuaCCGggGCa -3'
miRNA:   3'- -GUACgCGCCGCuGUaCAAC--GGCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.