miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11438 5' -54 NC_003085.1 + 33568 1.12 0.00064
Target:  5'- cCAUGCGCGGCGACAUGUUGCCGAAGCg -3'
miRNA:   3'- -GUACGCGCCGCUGUACAACGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 40586 0.79 0.156784
Target:  5'- gCAUGCcagacGCGGUGACGUGgaUGCCGAuGCa -3'
miRNA:   3'- -GUACG-----CGCCGCUGUACa-ACGGCUuCG- -5'
11438 5' -54 NC_003085.1 + 14046 0.75 0.262549
Target:  5'- -cUGCGCGaCGGCGUGUccGUCGAGGCc -3'
miRNA:   3'- guACGCGCcGCUGUACAa-CGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 16750 0.74 0.314153
Target:  5'- --gGUGUGGCGACGcacUGUUGCCGcaauGCc -3'
miRNA:   3'- guaCGCGCCGCUGU---ACAACGGCuu--CG- -5'
11438 5' -54 NC_003085.1 + 15924 0.73 0.355496
Target:  5'- uCGUGCGUGGaCGGCGUGUgacaggcucgGCUGGuGGCg -3'
miRNA:   3'- -GUACGCGCC-GCUGUACAa---------CGGCU-UCG- -5'
11438 5' -54 NC_003085.1 + 26214 0.72 0.400524
Target:  5'- uGUGCGCgGGCGGCGcGgUGC-GAAGCg -3'
miRNA:   3'- gUACGCG-CCGCUGUaCaACGgCUUCG- -5'
11438 5' -54 NC_003085.1 + 3780 0.72 0.409956
Target:  5'- cCGUGacuCGCGGCuGACGgac-GCCGAAGCg -3'
miRNA:   3'- -GUAC---GCGCCG-CUGUacaaCGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 24298 0.72 0.419526
Target:  5'- --gGCGCGGaUGA-AUGUcGCCGAGGCc -3'
miRNA:   3'- guaCGCGCC-GCUgUACAaCGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 22898 0.72 0.419526
Target:  5'- gGUGCGacucCGGCGGag-GcUGCCGggGCg -3'
miRNA:   3'- gUACGC----GCCGCUguaCaACGGCuuCG- -5'
11438 5' -54 NC_003085.1 + 3939 0.71 0.439063
Target:  5'- --aGCGCcGCGGCgAUGUUGUCGcGGCc -3'
miRNA:   3'- guaCGCGcCGCUG-UACAACGGCuUCG- -5'
11438 5' -54 NC_003085.1 + 9339 0.71 0.440054
Target:  5'- --cGCGCGGCGGCcaggaccagcaGCCGAGGUc -3'
miRNA:   3'- guaCGCGCCGCUGuacaa------CGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 27678 0.71 0.449025
Target:  5'- ----gGCGGCGACGUGcuggUGCUGucGCg -3'
miRNA:   3'- guacgCGCCGCUGUACa---ACGGCuuCG- -5'
11438 5' -54 NC_003085.1 + 41558 0.71 0.449025
Target:  5'- --cGcCGCGGCGGCA-GUcGCgGGAGCc -3'
miRNA:   3'- guaC-GCGCCGCUGUaCAaCGgCUUCG- -5'
11438 5' -54 NC_003085.1 + 41394 0.71 0.45911
Target:  5'- gGUGgGUGaCGGcCGUGUUGUCGGAGCc -3'
miRNA:   3'- gUACgCGCcGCU-GUACAACGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 46638 0.71 0.45911
Target:  5'- -cUGC-CGGgcaGACGUGUugccagugaUGCCGAGGCg -3'
miRNA:   3'- guACGcGCCg--CUGUACA---------ACGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 1900 0.71 0.45911
Target:  5'- uCGUGUcCGGCGGCuggguUGUUGCgGAAGa -3'
miRNA:   3'- -GUACGcGCCGCUGu----ACAACGgCUUCg -5'
11438 5' -54 NC_003085.1 + 8793 0.7 0.479634
Target:  5'- -cUGCGcCGGCGGCuccgcgagGUUGCgCGgcGCa -3'
miRNA:   3'- guACGC-GCCGCUGua------CAACG-GCuuCG- -5'
11438 5' -54 NC_003085.1 + 47142 0.7 0.490063
Target:  5'- gAUGaaGCGGCGGCcgG-UGgCGAGGCa -3'
miRNA:   3'- gUACg-CGCCGCUGuaCaACgGCUUCG- -5'
11438 5' -54 NC_003085.1 + 21488 0.7 0.490063
Target:  5'- -cUGCGCGGCGugGUGgacugGUuccccuUGGAGCc -3'
miRNA:   3'- guACGCGCCGCugUACaa---CG------GCUUCG- -5'
11438 5' -54 NC_003085.1 + 17938 0.7 0.511229
Target:  5'- --aGCGCGGCG-CucUGggcucUGCUGggGCa -3'
miRNA:   3'- guaCGCGCCGCuGu-ACa----ACGGCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.