miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11438 5' -54 NC_003085.1 + 10494 0.68 0.610221
Target:  5'- -cUGCGCGGCGcAC-UGgagaauccGCgGAAGCg -3'
miRNA:   3'- guACGCGCCGC-UGuACaa------CGgCUUCG- -5'
11438 5' -54 NC_003085.1 + 23567 0.7 0.511229
Target:  5'- --gGCGCGGCGuuGCgAUGUcGCUGGAGg -3'
miRNA:   3'- guaCGCGCCGC--UG-UACAaCGGCUUCg -5'
11438 5' -54 NC_003085.1 + 5614 0.7 0.521954
Target:  5'- aGUGaCGCGGUggugGACggGcUGCUGGAGCg -3'
miRNA:   3'- gUAC-GCGCCG----CUGuaCaACGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 1585 0.7 0.532765
Target:  5'- --gGCGCGGCGuACGcg-UGCCGuguGCa -3'
miRNA:   3'- guaCGCGCCGC-UGUacaACGGCuu-CG- -5'
11438 5' -54 NC_003085.1 + 15848 0.69 0.543655
Target:  5'- gGUGCaaGGCGAUugaGUUgagcGCCGAAGCc -3'
miRNA:   3'- gUACGcgCCGCUGua-CAA----CGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 46400 0.69 0.554617
Target:  5'- uGUGCGCGGUGACAUcgcaGUgGUCu-GGCg -3'
miRNA:   3'- gUACGCGCCGCUGUA----CAaCGGcuUCG- -5'
11438 5' -54 NC_003085.1 + 16059 0.69 0.575615
Target:  5'- aCGUGCGCcacgacgGGCGuCAUGUUG-CGAcaguGGCu -3'
miRNA:   3'- -GUACGCG-------CCGCuGUACAACgGCU----UCG- -5'
11438 5' -54 NC_003085.1 + 34517 0.69 0.581172
Target:  5'- --cGUGCGGCGACAgcgucagcaacacaGcgGCCGcGAGCg -3'
miRNA:   3'- guaCGCGCCGCUGUa-------------CaaCGGC-UUCG- -5'
11438 5' -54 NC_003085.1 + 48387 0.68 0.599023
Target:  5'- --aGCGCGGCGAgCAgcgccgcauUGUcUGCCucGGCg -3'
miRNA:   3'- guaCGCGCCGCU-GU---------ACA-ACGGcuUCG- -5'
11438 5' -54 NC_003085.1 + 17938 0.7 0.511229
Target:  5'- --aGCGCGGCG-CucUGggcucUGCUGggGCa -3'
miRNA:   3'- guaCGCGCCGCuGu-ACa----ACGGCuuCG- -5'
11438 5' -54 NC_003085.1 + 21488 0.7 0.490063
Target:  5'- -cUGCGCGGCGugGUGgacugGUuccccuUGGAGCc -3'
miRNA:   3'- guACGCGCCGCugUACaa---CG------GCUUCG- -5'
11438 5' -54 NC_003085.1 + 41394 0.71 0.45911
Target:  5'- gGUGgGUGaCGGcCGUGUUGUCGGAGCc -3'
miRNA:   3'- gUACgCGCcGCU-GUACAACGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 15924 0.73 0.355496
Target:  5'- uCGUGCGUGGaCGGCGUGUgacaggcucgGCUGGuGGCg -3'
miRNA:   3'- -GUACGCGCC-GCUGUACAa---------CGGCU-UCG- -5'
11438 5' -54 NC_003085.1 + 22898 0.72 0.419526
Target:  5'- gGUGCGacucCGGCGGag-GcUGCCGggGCg -3'
miRNA:   3'- gUACGC----GCCGCUguaCaACGGCuuCG- -5'
11438 5' -54 NC_003085.1 + 24298 0.72 0.419526
Target:  5'- --gGCGCGGaUGA-AUGUcGCCGAGGCc -3'
miRNA:   3'- guaCGCGCC-GCUgUACAaCGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 3939 0.71 0.439063
Target:  5'- --aGCGCcGCGGCgAUGUUGUCGcGGCc -3'
miRNA:   3'- guaCGCGcCGCUG-UACAACGGCuUCG- -5'
11438 5' -54 NC_003085.1 + 41558 0.71 0.449025
Target:  5'- --cGcCGCGGCGGCA-GUcGCgGGAGCc -3'
miRNA:   3'- guaC-GCGCCGCUGUaCAaCGgCUUCG- -5'
11438 5' -54 NC_003085.1 + 27678 0.71 0.449025
Target:  5'- ----gGCGGCGACGUGcuggUGCUGucGCg -3'
miRNA:   3'- guacgCGCCGCUGUACa---ACGGCuuCG- -5'
11438 5' -54 NC_003085.1 + 1900 0.71 0.45911
Target:  5'- uCGUGUcCGGCGGCuggguUGUUGCgGAAGa -3'
miRNA:   3'- -GUACGcGCCGCUGu----ACAACGgCUUCg -5'
11438 5' -54 NC_003085.1 + 46638 0.71 0.45911
Target:  5'- -cUGC-CGGgcaGACGUGUugccagugaUGCCGAGGCg -3'
miRNA:   3'- guACGcGCCg--CUGUACA---------ACGGCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.