miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11438 5' -54 NC_003085.1 + 592 0.7 0.511229
Target:  5'- cCGUGUGCGGCGAC-UGcaaGcCCGucGCg -3'
miRNA:   3'- -GUACGCGCCGCUGuACaa-C-GGCuuCG- -5'
11438 5' -54 NC_003085.1 + 1585 0.7 0.532765
Target:  5'- --gGCGCGGCGuACGcg-UGCCGuguGCa -3'
miRNA:   3'- guaCGCGCCGC-UGUacaACGGCuu-CG- -5'
11438 5' -54 NC_003085.1 + 1900 0.71 0.45911
Target:  5'- uCGUGUcCGGCGGCuggguUGUUGCgGAAGa -3'
miRNA:   3'- -GUACGcGCCGCUGu----ACAACGgCUUCg -5'
11438 5' -54 NC_003085.1 + 2204 0.67 0.710625
Target:  5'- --cGCGUGGCGGacgGUgacGCCuGAGCa -3'
miRNA:   3'- guaCGCGCCGCUguaCAa--CGGcUUCG- -5'
11438 5' -54 NC_003085.1 + 2656 0.67 0.655107
Target:  5'- cCGUG-GUGGCGuCAcGUUGuaCCGggGCa -3'
miRNA:   3'- -GUACgCGCCGCuGUaCAAC--GGCuuCG- -5'
11438 5' -54 NC_003085.1 + 3623 0.69 0.565643
Target:  5'- aCGUGCGCcGCGAC-UGgcugGCCGAGa- -3'
miRNA:   3'- -GUACGCGcCGCUGuACaa--CGGCUUcg -5'
11438 5' -54 NC_003085.1 + 3780 0.72 0.409956
Target:  5'- cCGUGacuCGCGGCuGACGgac-GCCGAAGCg -3'
miRNA:   3'- -GUAC---GCGCCG-CUGUacaaCGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 3939 0.71 0.439063
Target:  5'- --aGCGCcGCGGCgAUGUUGUCGcGGCc -3'
miRNA:   3'- guaCGCGcCGCUG-UACAACGGCuUCG- -5'
11438 5' -54 NC_003085.1 + 4500 0.66 0.721536
Target:  5'- --cGCGCuGGCGACugg--GCCaacGAGGCg -3'
miRNA:   3'- guaCGCG-CCGCUGuacaaCGG---CUUCG- -5'
11438 5' -54 NC_003085.1 + 5614 0.7 0.521954
Target:  5'- aGUGaCGCGGUggugGACggGcUGCUGGAGCg -3'
miRNA:   3'- gUAC-GCGCCG----CUGuaCaACGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 6289 0.66 0.761006
Target:  5'- --cGCGCGGCGguggagcgacuggaGCAg---GCCG-AGCg -3'
miRNA:   3'- guaCGCGCCGC--------------UGUacaaCGGCuUCG- -5'
11438 5' -54 NC_003085.1 + 7512 0.68 0.642769
Target:  5'- gGUGCGUcucgguGGCGGCAaGUggggccaUGCCGuGGGCa -3'
miRNA:   3'- gUACGCG------CCGCUGUaCA-------ACGGC-UUCG- -5'
11438 5' -54 NC_003085.1 + 8793 0.7 0.479634
Target:  5'- -cUGCGcCGGCGGCuccgcgagGUUGCgCGgcGCa -3'
miRNA:   3'- guACGC-GCCGCUGua------CAACG-GCuuCG- -5'
11438 5' -54 NC_003085.1 + 9339 0.71 0.440054
Target:  5'- --cGCGCGGCGGCcaggaccagcaGCCGAGGUc -3'
miRNA:   3'- guaCGCGCCGCUGuacaa------CGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 9444 0.66 0.732354
Target:  5'- aCGUGC-CGGCGcuCAUGgacgaGCuCGAGGCc -3'
miRNA:   3'- -GUACGcGCCGCu-GUACaa---CG-GCUUCG- -5'
11438 5' -54 NC_003085.1 + 10494 0.68 0.610221
Target:  5'- -cUGCGCGGCGcAC-UGgagaauccGCgGAAGCg -3'
miRNA:   3'- guACGCGCCGC-UGuACaa------CGgCUUCG- -5'
11438 5' -54 NC_003085.1 + 11098 0.66 0.753664
Target:  5'- gAUGuCGcCGGCGGCAUucgUGCCcagGAAGUu -3'
miRNA:   3'- gUAC-GC-GCCGCUGUAca-ACGG---CUUCG- -5'
11438 5' -54 NC_003085.1 + 12237 0.67 0.6663
Target:  5'- --aGCGCGGCGGCugg--GCCGccagaauugaAGGCc -3'
miRNA:   3'- guaCGCGCCGCUGuacaaCGGC----------UUCG- -5'
11438 5' -54 NC_003085.1 + 14046 0.75 0.262549
Target:  5'- -cUGCGCGaCGGCGUGUccGUCGAGGCc -3'
miRNA:   3'- guACGCGCcGCUGUACAa-CGGCUUCG- -5'
11438 5' -54 NC_003085.1 + 14666 0.66 0.753664
Target:  5'- --aGCGCGGCaagGACuUGgaggcGCCGuGGCg -3'
miRNA:   3'- guaCGCGCCG---CUGuACaa---CGGCuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.