Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11439 | 3' | -52.2 | NC_003085.1 | + | 46617 | 0.66 | 0.848635 |
Target: 5'- gGCUCAGCCcuccucgcccgGCUGcCG-GGCA-GACGUg -3' miRNA: 3'- -CGAGUCGG-----------UGACaGCgUUGUaCUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 15879 | 0.66 | 0.857325 |
Target: 5'- cGCuUCAuGCCACcGcuUCgGCAACAUGuCGCc -3' miRNA: 3'- -CG-AGU-CGGUGaC--AG-CGUUGUACuGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 29276 | 0.66 | 0.857325 |
Target: 5'- aUUCGGCCAgcagCGCAAC--GACGCg -3' miRNA: 3'- cGAGUCGGUgacaGCGUUGuaCUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 23562 | 0.66 | 0.848635 |
Target: 5'- uGCUCGG-CGCggcGUUGCGAUGUcgcuggagGACGCg -3' miRNA: 3'- -CGAGUCgGUGa--CAGCGUUGUA--------CUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 34254 | 0.66 | 0.839704 |
Target: 5'- cCUCGcCCACUucCGCGGCGcGGCGCu -3' miRNA: 3'- cGAGUcGGUGAcaGCGUUGUaCUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 22312 | 0.66 | 0.839704 |
Target: 5'- -aUCAGCCagGCUGccCGCGcCAUGAaucCGCa -3' miRNA: 3'- cgAGUCGG--UGACa-GCGUuGUACU---GCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 45466 | 0.66 | 0.830542 |
Target: 5'- cGCUCAuCCAgUcGUCGUuguccuuCGUGAUGCa -3' miRNA: 3'- -CGAGUcGGUgA-CAGCGuu-----GUACUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 14894 | 0.66 | 0.830542 |
Target: 5'- uGUUCGccGCCAUUGaggaguugCGCAccggccgccagcGCGUGGCGCu -3' miRNA: 3'- -CGAGU--CGGUGACa-------GCGU------------UGUACUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 13210 | 0.66 | 0.839704 |
Target: 5'- --aCGGUCGCUGggaacggggUGCGGCgAUGACGUg -3' miRNA: 3'- cgaGUCGGUGACa--------GCGUUG-UACUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 2323 | 0.66 | 0.830542 |
Target: 5'- cGCcacCGGCCGCcgcuucaucgGUUGCGACAUccgggaGGCGCa -3' miRNA: 3'- -CGa--GUCGGUGa---------CAGCGUUGUA------CUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 43163 | 0.66 | 0.821157 |
Target: 5'- cGCUCGGCCuGCUccaGUCGCucCAccgccGCGCg -3' miRNA: 3'- -CGAGUCGG-UGA---CAGCGuuGUac---UGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 5143 | 0.66 | 0.830542 |
Target: 5'- cGCcCAGgCAUccaUGUCGCAACAccuCGCg -3' miRNA: 3'- -CGaGUCgGUG---ACAGCGUUGUacuGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 8632 | 0.66 | 0.821157 |
Target: 5'- aGCcCGGCCGCcGUCaGguACAggccggccggGACGCg -3' miRNA: 3'- -CGaGUCGGUGaCAG-CguUGUa---------CUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 30726 | 0.66 | 0.848635 |
Target: 5'- gGCuUCGGCaUGCUG-CGCAGgAaGGCGCg -3' miRNA: 3'- -CG-AGUCG-GUGACaGCGUUgUaCUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 41357 | 0.67 | 0.811562 |
Target: 5'- -aUCAGCgcccaACU-UCGCGGCGUGAUGUu -3' miRNA: 3'- cgAGUCGg----UGAcAGCGUUGUACUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 40621 | 0.67 | 0.771297 |
Target: 5'- uGCUgaCGGCCGCUGccguccUCGUcGCccUGACGCu -3' miRNA: 3'- -CGA--GUCGGUGAC------AGCGuUGu-ACUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 35301 | 0.67 | 0.801767 |
Target: 5'- uGCUCGGCaGCagGUCGCGGCGgcUGuCGg -3' miRNA: 3'- -CGAGUCGgUGa-CAGCGUUGU--ACuGCg -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 45690 | 0.67 | 0.791783 |
Target: 5'- -gUCAGCCGCgaGUCacggaGCAcuGCGUaGACGCc -3' miRNA: 3'- cgAGUCGGUGa-CAG-----CGU--UGUA-CUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 44308 | 0.67 | 0.781622 |
Target: 5'- -aUC-GCCGCgaggUGUUGCGACAUGgAUGCc -3' miRNA: 3'- cgAGuCGGUG----ACAGCGUUGUAC-UGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 38135 | 0.67 | 0.771297 |
Target: 5'- gGCUCGccGCCcuGCUGgCGUugGugGUGGCGCu -3' miRNA: 3'- -CGAGU--CGG--UGACaGCG--UugUACUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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