miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11439 3' -52.2 NC_003085.1 + 33385 1.14 0.000822
Target:  5'- cGCUCAGCCACUGUCGCAACAUGACGCc -3'
miRNA:   3'- -CGAGUCGGUGACAGCGUUGUACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 8436 0.91 0.033609
Target:  5'- uGCUCGGCCAgcagcagccguccCUGUCGCucuACAUGACGCg -3'
miRNA:   3'- -CGAGUCGGU-------------GACAGCGu--UGUACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 2462 0.79 0.195955
Target:  5'- uGCgUCAGCCACUGaCGCAuaGUGugGCc -3'
miRNA:   3'- -CG-AGUCGGUGACaGCGUugUACugCG- -5'
11439 3' -52.2 NC_003085.1 + 24045 0.77 0.277934
Target:  5'- uGCUCAGCCGUUGcCGUugagGGCcgGACGCg -3'
miRNA:   3'- -CGAGUCGGUGACaGCG----UUGuaCUGCG- -5'
11439 3' -52.2 NC_003085.1 + 34205 0.75 0.33996
Target:  5'- aGCUCGGCCGCggccuccggGUCGUccucccaGAguUGGCGCa -3'
miRNA:   3'- -CGAGUCGGUGa--------CAGCG-------UUguACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 7772 0.75 0.358051
Target:  5'- -aUCAGCCAUcGUCGCGGCGa-GCGCa -3'
miRNA:   3'- cgAGUCGGUGaCAGCGUUGUacUGCG- -5'
11439 3' -52.2 NC_003085.1 + 32812 0.74 0.394335
Target:  5'- aGUgaagCAGCgGCUGUCGCGACugauUGGgGCc -3'
miRNA:   3'- -CGa---GUCGgUGACAGCGUUGu---ACUgCG- -5'
11439 3' -52.2 NC_003085.1 + 24804 0.74 0.403771
Target:  5'- cGCUCAGCC-C-GUCGCGGC---GCGCg -3'
miRNA:   3'- -CGAGUCGGuGaCAGCGUUGuacUGCG- -5'
11439 3' -52.2 NC_003085.1 + 29848 0.74 0.413348
Target:  5'- cUUCGauGCC-CUGUUGCAGCAgaUGACGCc -3'
miRNA:   3'- cGAGU--CGGuGACAGCGUUGU--ACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 14932 0.72 0.473606
Target:  5'- cGCUCgcGGCCGCUGU-GUuGC-UGACGCu -3'
miRNA:   3'- -CGAG--UCGGUGACAgCGuUGuACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 3702 0.72 0.484078
Target:  5'- --gCGGCCACgcagCGCGACGUGccACGCg -3'
miRNA:   3'- cgaGUCGGUGaca-GCGUUGUAC--UGCG- -5'
11439 3' -52.2 NC_003085.1 + 32168 0.72 0.49466
Target:  5'- gGCgUCGGCCagGCUG-CGCcaGugGUGGCGCg -3'
miRNA:   3'- -CG-AGUCGG--UGACaGCG--UugUACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 18786 0.72 0.505345
Target:  5'- aGCgaaGGCgGCUGUCGCugagcgacgaGACGUGGCGa -3'
miRNA:   3'- -CGag-UCGgUGACAGCG----------UUGUACUGCg -5'
11439 3' -52.2 NC_003085.1 + 826 0.71 0.549001
Target:  5'- -gUCGGCCugUGgCGCAAgGUGAagGCa -3'
miRNA:   3'- cgAGUCGGugACaGCGUUgUACUg-CG- -5'
11439 3' -52.2 NC_003085.1 + 44030 0.71 0.560108
Target:  5'- cGgUCAuCCAUgaccgagCGCAGCGUGACGCg -3'
miRNA:   3'- -CgAGUcGGUGaca----GCGUUGUACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 12939 0.71 0.571276
Target:  5'- -gUCAGUCGCcGUCGCuauACGUGACu- -3'
miRNA:   3'- cgAGUCGGUGaCAGCGu--UGUACUGcg -5'
11439 3' -52.2 NC_003085.1 + 40360 0.71 0.571276
Target:  5'- gGCa-AGCCGCUGcugccCGCGGCGcUGACGCc -3'
miRNA:   3'- -CGagUCGGUGACa----GCGUUGU-ACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 42249 0.71 0.582497
Target:  5'- gGCUCGcGCUACUccaGCGGCAgGGCGCg -3'
miRNA:   3'- -CGAGU-CGGUGAcagCGUUGUaCUGCG- -5'
11439 3' -52.2 NC_003085.1 + 185 0.7 0.593761
Target:  5'- cGCagCAGCCACaggggGUgGC--CAUGACGCa -3'
miRNA:   3'- -CGa-GUCGGUGa----CAgCGuuGUACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 35142 0.7 0.593761
Target:  5'- -gUgGGCCgGCUGcCGCAACAUGA-GCg -3'
miRNA:   3'- cgAgUCGG-UGACaGCGUUGUACUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.