Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11439 | 3' | -52.2 | NC_003085.1 | + | 48095 | 0.7 | 0.616384 |
Target: 5'- uCUCAGCCcgucGCUGUCGU-ACuUGGCGg -3' miRNA: 3'- cGAGUCGG----UGACAGCGuUGuACUGCg -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 38812 | 0.69 | 0.650401 |
Target: 5'- cGCUCAGCCAg-G-CGUgugAGCAgGGCGCa -3' miRNA: 3'- -CGAGUCGGUgaCaGCG---UUGUaCUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 48765 | 0.69 | 0.673008 |
Target: 5'- uGCUCAgGCCGCgccCGaGGCcgGACGCg -3' miRNA: 3'- -CGAGU-CGGUGacaGCgUUGuaCUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 26230 | 0.69 | 0.673008 |
Target: 5'- cCUCGGCCAggauaUGgugCGCGACuaccagugGACGCa -3' miRNA: 3'- cGAGUCGGUg----ACa--GCGUUGua------CUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 39410 | 0.69 | 0.684256 |
Target: 5'- --cCAGCCGuguCaGUCGCGcgcucgaccucGCAUGGCGCa -3' miRNA: 3'- cgaGUCGGU---GaCAGCGU-----------UGUACUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 34103 | 0.69 | 0.684256 |
Target: 5'- cGCgUCuGCCACUGgUGCAGgGUGuuGCg -3' miRNA: 3'- -CG-AGuCGGUGACaGCGUUgUACugCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 40324 | 0.69 | 0.695451 |
Target: 5'- aGCUCcgccagguGCCGCUcccagagagGUCGCGACAgcaacucGACGUa -3' miRNA: 3'- -CGAGu-------CGGUGA---------CAGCGUUGUa------CUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 15961 | 0.68 | 0.717633 |
Target: 5'- cGCUCccuuGGCCGCUGggaggUGgGGCGUGAgCGUc -3' miRNA: 3'- -CGAG----UCGGUGACa----GCgUUGUACU-GCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 28796 | 0.68 | 0.717633 |
Target: 5'- --gCAGCCGCUccaGCAACuccGACGCg -3' miRNA: 3'- cgaGUCGGUGAcagCGUUGua-CUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 35254 | 0.68 | 0.728596 |
Target: 5'- cGCUU-GCgCGCgggcuUGUCGCAGCccgGACGCu -3' miRNA: 3'- -CGAGuCG-GUG-----ACAGCGUUGua-CUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 22486 | 0.68 | 0.728596 |
Target: 5'- aGCcCAGCCgGCUG-CGCAggccgaGCucgGACGCg -3' miRNA: 3'- -CGaGUCGG-UGACaGCGU------UGua-CUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 12592 | 0.68 | 0.728596 |
Target: 5'- uGCUCguGGuCCgACUGaCGCG-CGUGGCGCc -3' miRNA: 3'- -CGAG--UC-GG-UGACaGCGUuGUACUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 24261 | 0.68 | 0.739456 |
Target: 5'- --cCAGCCguACUGcUCgGCGACGUuGGCGCu -3' miRNA: 3'- cgaGUCGG--UGAC-AG-CGUUGUA-CUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 45545 | 0.68 | 0.739456 |
Target: 5'- cGCUCGGCUuccaguucgagGC-GUCGCAGCAcGA-GCa -3' miRNA: 3'- -CGAGUCGG-----------UGaCAGCGUUGUaCUgCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 23431 | 0.68 | 0.750201 |
Target: 5'- cGCUUcGCCcaGCaGgCGCAGCAggGACGCa -3' miRNA: 3'- -CGAGuCGG--UGaCaGCGUUGUa-CUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 10205 | 0.68 | 0.750201 |
Target: 5'- uGCUCacccgcgggaGGCCGCcagaaauucGUCGCAG-GUGGCGCa -3' miRNA: 3'- -CGAG----------UCGGUGa--------CAGCGUUgUACUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 3327 | 0.68 | 0.750201 |
Target: 5'- aUUCAGgCGCUgGUCGCcGCAcagacGACGCu -3' miRNA: 3'- cGAGUCgGUGA-CAGCGuUGUa----CUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 47006 | 0.67 | 0.771297 |
Target: 5'- uGCgUCAGUgGCUGaCGCAuaguCAaGGCGCu -3' miRNA: 3'- -CG-AGUCGgUGACaGCGUu---GUaCUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 40621 | 0.67 | 0.771297 |
Target: 5'- uGCUgaCGGCCGCUGccguccUCGUcGCccUGACGCu -3' miRNA: 3'- -CGA--GUCGGUGAC------AGCGuUGu-ACUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 38135 | 0.67 | 0.771297 |
Target: 5'- gGCUCGccGCCcuGCUGgCGUugGugGUGGCGCu -3' miRNA: 3'- -CGAGU--CGG--UGACaGCG--UugUACUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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