miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11439 3' -52.2 NC_003085.1 + 35481 0.67 0.811562
Target:  5'- cGCUCGGuCCAaccgaGCAACG-GGCGCu -3'
miRNA:   3'- -CGAGUC-GGUgacagCGUUGUaCUGCG- -5'
11439 3' -52.2 NC_003085.1 + 16914 0.67 0.810591
Target:  5'- cGCUCAuGUCGCUGagcuuguUCGCGACGguGCGg -3'
miRNA:   3'- -CGAGU-CGGUGAC-------AGCGUUGUacUGCg -5'
11439 3' -52.2 NC_003085.1 + 8557 0.67 0.807667
Target:  5'- aGCUC-GUCACggcaggucuugagGUCGCGGCGcagGAUGCc -3'
miRNA:   3'- -CGAGuCGGUGa------------CAGCGUUGUa--CUGCG- -5'
11439 3' -52.2 NC_003085.1 + 35301 0.67 0.801767
Target:  5'- uGCUCGGCaGCagGUCGCGGCGgcUGuCGg -3'
miRNA:   3'- -CGAGUCGgUGa-CAGCGUUGU--ACuGCg -5'
11439 3' -52.2 NC_003085.1 + 34163 0.67 0.801767
Target:  5'- gGCUCGacGCCcCgggC-CAGCAUGACGCg -3'
miRNA:   3'- -CGAGU--CGGuGacaGcGUUGUACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 22541 0.67 0.801767
Target:  5'- --aCAGUCGCUGaca-GGCAUGGCGCu -3'
miRNA:   3'- cgaGUCGGUGACagcgUUGUACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 45690 0.67 0.791783
Target:  5'- -gUCAGCCGCgaGUCacggaGCAcuGCGUaGACGCc -3'
miRNA:   3'- cgAGUCGGUGa-CAG-----CGU--UGUA-CUGCG- -5'
11439 3' -52.2 NC_003085.1 + 20350 0.67 0.791783
Target:  5'- gGUUCcgcGCCGC-GUCGCcGCugcUGACGCc -3'
miRNA:   3'- -CGAGu--CGGUGaCAGCGuUGu--ACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 44308 0.67 0.781622
Target:  5'- -aUC-GCCGCgaggUGUUGCGACAUGgAUGCc -3'
miRNA:   3'- cgAGuCGGUG----ACAGCGUUGUAC-UGCG- -5'
11439 3' -52.2 NC_003085.1 + 47006 0.67 0.771297
Target:  5'- uGCgUCAGUgGCUGaCGCAuaguCAaGGCGCu -3'
miRNA:   3'- -CG-AGUCGgUGACaGCGUu---GUaCUGCG- -5'
11439 3' -52.2 NC_003085.1 + 38135 0.67 0.771297
Target:  5'- gGCUCGccGCCcuGCUGgCGUugGugGUGGCGCu -3'
miRNA:   3'- -CGAGU--CGG--UGACaGCG--UugUACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 40621 0.67 0.771297
Target:  5'- uGCUgaCGGCCGCUGccguccUCGUcGCccUGACGCu -3'
miRNA:   3'- -CGA--GUCGGUGAC------AGCGuUGu-ACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 3327 0.68 0.750201
Target:  5'- aUUCAGgCGCUgGUCGCcGCAcagacGACGCu -3'
miRNA:   3'- cGAGUCgGUGA-CAGCGuUGUa----CUGCG- -5'
11439 3' -52.2 NC_003085.1 + 23431 0.68 0.750201
Target:  5'- cGCUUcGCCcaGCaGgCGCAGCAggGACGCa -3'
miRNA:   3'- -CGAGuCGG--UGaCaGCGUUGUa-CUGCG- -5'
11439 3' -52.2 NC_003085.1 + 10205 0.68 0.750201
Target:  5'- uGCUCacccgcgggaGGCCGCcagaaauucGUCGCAG-GUGGCGCa -3'
miRNA:   3'- -CGAG----------UCGGUGa--------CAGCGUUgUACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 24261 0.68 0.739456
Target:  5'- --cCAGCCguACUGcUCgGCGACGUuGGCGCu -3'
miRNA:   3'- cgaGUCGG--UGAC-AG-CGUUGUA-CUGCG- -5'
11439 3' -52.2 NC_003085.1 + 45545 0.68 0.739456
Target:  5'- cGCUCGGCUuccaguucgagGC-GUCGCAGCAcGA-GCa -3'
miRNA:   3'- -CGAGUCGG-----------UGaCAGCGUUGUaCUgCG- -5'
11439 3' -52.2 NC_003085.1 + 35254 0.68 0.728596
Target:  5'- cGCUU-GCgCGCgggcuUGUCGCAGCccgGACGCu -3'
miRNA:   3'- -CGAGuCG-GUG-----ACAGCGUUGua-CUGCG- -5'
11439 3' -52.2 NC_003085.1 + 12592 0.68 0.728596
Target:  5'- uGCUCguGGuCCgACUGaCGCG-CGUGGCGCc -3'
miRNA:   3'- -CGAG--UC-GG-UGACaGCGUuGUACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 22486 0.68 0.728596
Target:  5'- aGCcCAGCCgGCUG-CGCAggccgaGCucgGACGCg -3'
miRNA:   3'- -CGaGUCGG-UGACaGCGU------UGua-CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.