miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11439 3' -52.2 NC_003085.1 + 15879 0.66 0.857325
Target:  5'- cGCuUCAuGCCACcGcuUCgGCAACAUGuCGCc -3'
miRNA:   3'- -CG-AGU-CGGUGaC--AG-CGUUGUACuGCG- -5'
11439 3' -52.2 NC_003085.1 + 15961 0.68 0.717633
Target:  5'- cGCUCccuuGGCCGCUGggaggUGgGGCGUGAgCGUc -3'
miRNA:   3'- -CGAG----UCGGUGACa----GCgUUGUACU-GCG- -5'
11439 3' -52.2 NC_003085.1 + 16914 0.67 0.810591
Target:  5'- cGCUCAuGUCGCUGagcuuguUCGCGACGguGCGg -3'
miRNA:   3'- -CGAGU-CGGUGAC-------AGCGUUGUacUGCg -5'
11439 3' -52.2 NC_003085.1 + 18786 0.72 0.505345
Target:  5'- aGCgaaGGCgGCUGUCGCugagcgacgaGACGUGGCGa -3'
miRNA:   3'- -CGag-UCGgUGACAGCG----------UUGUACUGCg -5'
11439 3' -52.2 NC_003085.1 + 20350 0.67 0.791783
Target:  5'- gGUUCcgcGCCGC-GUCGCcGCugcUGACGCc -3'
miRNA:   3'- -CGAGu--CGGUGaCAGCGuUGu--ACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 22312 0.66 0.839704
Target:  5'- -aUCAGCCagGCUGccCGCGcCAUGAaucCGCa -3'
miRNA:   3'- cgAGUCGG--UGACa-GCGUuGUACU---GCG- -5'
11439 3' -52.2 NC_003085.1 + 22486 0.68 0.728596
Target:  5'- aGCcCAGCCgGCUG-CGCAggccgaGCucgGACGCg -3'
miRNA:   3'- -CGaGUCGG-UGACaGCGU------UGua-CUGCG- -5'
11439 3' -52.2 NC_003085.1 + 22541 0.67 0.801767
Target:  5'- --aCAGUCGCUGaca-GGCAUGGCGCu -3'
miRNA:   3'- cgaGUCGGUGACagcgUUGUACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 23431 0.68 0.750201
Target:  5'- cGCUUcGCCcaGCaGgCGCAGCAggGACGCa -3'
miRNA:   3'- -CGAGuCGG--UGaCaGCGUUGUa-CUGCG- -5'
11439 3' -52.2 NC_003085.1 + 23562 0.66 0.848635
Target:  5'- uGCUCGG-CGCggcGUUGCGAUGUcgcuggagGACGCg -3'
miRNA:   3'- -CGAGUCgGUGa--CAGCGUUGUA--------CUGCG- -5'
11439 3' -52.2 NC_003085.1 + 24045 0.77 0.277934
Target:  5'- uGCUCAGCCGUUGcCGUugagGGCcgGACGCg -3'
miRNA:   3'- -CGAGUCGGUGACaGCG----UUGuaCUGCG- -5'
11439 3' -52.2 NC_003085.1 + 24261 0.68 0.739456
Target:  5'- --cCAGCCguACUGcUCgGCGACGUuGGCGCu -3'
miRNA:   3'- cgaGUCGG--UGAC-AG-CGUUGUA-CUGCG- -5'
11439 3' -52.2 NC_003085.1 + 24804 0.74 0.403771
Target:  5'- cGCUCAGCC-C-GUCGCGGC---GCGCg -3'
miRNA:   3'- -CGAGUCGGuGaCAGCGUUGuacUGCG- -5'
11439 3' -52.2 NC_003085.1 + 26230 0.69 0.673008
Target:  5'- cCUCGGCCAggauaUGgugCGCGACuaccagugGACGCa -3'
miRNA:   3'- cGAGUCGGUg----ACa--GCGUUGua------CUGCG- -5'
11439 3' -52.2 NC_003085.1 + 26429 0.67 0.811562
Target:  5'- aGCUUcGcCCACUGcUCGCGAaccucugGGCGCc -3'
miRNA:   3'- -CGAGuC-GGUGAC-AGCGUUgua----CUGCG- -5'
11439 3' -52.2 NC_003085.1 + 27246 0.67 0.811562
Target:  5'- uCUCAGCCuggaUG-CGCAGCAgGuCGCc -3'
miRNA:   3'- cGAGUCGGug--ACaGCGUUGUaCuGCG- -5'
11439 3' -52.2 NC_003085.1 + 28796 0.68 0.717633
Target:  5'- --gCAGCCGCUccaGCAACuccGACGCg -3'
miRNA:   3'- cgaGUCGGUGAcagCGUUGua-CUGCG- -5'
11439 3' -52.2 NC_003085.1 + 29276 0.66 0.857325
Target:  5'- aUUCGGCCAgcagCGCAAC--GACGCg -3'
miRNA:   3'- cGAGUCGGUgacaGCGUUGuaCUGCG- -5'
11439 3' -52.2 NC_003085.1 + 29848 0.74 0.413348
Target:  5'- cUUCGauGCC-CUGUUGCAGCAgaUGACGCc -3'
miRNA:   3'- cGAGU--CGGuGACAGCGUUGU--ACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 30726 0.66 0.848635
Target:  5'- gGCuUCGGCaUGCUG-CGCAGgAaGGCGCg -3'
miRNA:   3'- -CG-AGUCG-GUGACaGCGUUgUaCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.