miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11439 3' -52.2 NC_003085.1 + 15961 0.68 0.717633
Target:  5'- cGCUCccuuGGCCGCUGggaggUGgGGCGUGAgCGUc -3'
miRNA:   3'- -CGAG----UCGGUGACa----GCgUUGUACU-GCG- -5'
11439 3' -52.2 NC_003085.1 + 28796 0.68 0.717633
Target:  5'- --gCAGCCGCUccaGCAACuccGACGCg -3'
miRNA:   3'- cgaGUCGGUGAcagCGUUGua-CUGCG- -5'
11439 3' -52.2 NC_003085.1 + 40324 0.69 0.695451
Target:  5'- aGCUCcgccagguGCCGCUcccagagagGUCGCGACAgcaacucGACGUa -3'
miRNA:   3'- -CGAGu-------CGGUGA---------CAGCGUUGUa------CUGCG- -5'
11439 3' -52.2 NC_003085.1 + 39410 0.69 0.684256
Target:  5'- --cCAGCCGuguCaGUCGCGcgcucgaccucGCAUGGCGCa -3'
miRNA:   3'- cgaGUCGGU---GaCAGCGU-----------UGUACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 34103 0.69 0.684256
Target:  5'- cGCgUCuGCCACUGgUGCAGgGUGuuGCg -3'
miRNA:   3'- -CG-AGuCGGUGACaGCGUUgUACugCG- -5'
11439 3' -52.2 NC_003085.1 + 26230 0.69 0.673008
Target:  5'- cCUCGGCCAggauaUGgugCGCGACuaccagugGACGCa -3'
miRNA:   3'- cGAGUCGGUg----ACa--GCGUUGua------CUGCG- -5'
11439 3' -52.2 NC_003085.1 + 48765 0.69 0.673008
Target:  5'- uGCUCAgGCCGCgccCGaGGCcgGACGCg -3'
miRNA:   3'- -CGAGU-CGGUGacaGCgUUGuaCUGCG- -5'
11439 3' -52.2 NC_003085.1 + 38812 0.69 0.650401
Target:  5'- cGCUCAGCCAg-G-CGUgugAGCAgGGCGCa -3'
miRNA:   3'- -CGAGUCGGUgaCaGCG---UUGUaCUGCG- -5'
11439 3' -52.2 NC_003085.1 + 48095 0.7 0.616384
Target:  5'- uCUCAGCCcgucGCUGUCGU-ACuUGGCGg -3'
miRNA:   3'- cGAGUCGG----UGACAGCGuUGuACUGCg -5'
11439 3' -52.2 NC_003085.1 + 35142 0.7 0.593761
Target:  5'- -gUgGGCCgGCUGcCGCAACAUGA-GCg -3'
miRNA:   3'- cgAgUCGG-UGACaGCGUUGUACUgCG- -5'
11439 3' -52.2 NC_003085.1 + 185 0.7 0.593761
Target:  5'- cGCagCAGCCACaggggGUgGC--CAUGACGCa -3'
miRNA:   3'- -CGa-GUCGGUGa----CAgCGuuGUACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 42249 0.71 0.582497
Target:  5'- gGCUCGcGCUACUccaGCGGCAgGGCGCg -3'
miRNA:   3'- -CGAGU-CGGUGAcagCGUUGUaCUGCG- -5'
11439 3' -52.2 NC_003085.1 + 12939 0.71 0.571276
Target:  5'- -gUCAGUCGCcGUCGCuauACGUGACu- -3'
miRNA:   3'- cgAGUCGGUGaCAGCGu--UGUACUGcg -5'
11439 3' -52.2 NC_003085.1 + 40360 0.71 0.571276
Target:  5'- gGCa-AGCCGCUGcugccCGCGGCGcUGACGCc -3'
miRNA:   3'- -CGagUCGGUGACa----GCGUUGU-ACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 44030 0.71 0.560108
Target:  5'- cGgUCAuCCAUgaccgagCGCAGCGUGACGCg -3'
miRNA:   3'- -CgAGUcGGUGaca----GCGUUGUACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 826 0.71 0.549001
Target:  5'- -gUCGGCCugUGgCGCAAgGUGAagGCa -3'
miRNA:   3'- cgAGUCGGugACaGCGUUgUACUg-CG- -5'
11439 3' -52.2 NC_003085.1 + 18786 0.72 0.505345
Target:  5'- aGCgaaGGCgGCUGUCGCugagcgacgaGACGUGGCGa -3'
miRNA:   3'- -CGag-UCGgUGACAGCG----------UUGUACUGCg -5'
11439 3' -52.2 NC_003085.1 + 32168 0.72 0.49466
Target:  5'- gGCgUCGGCCagGCUG-CGCcaGugGUGGCGCg -3'
miRNA:   3'- -CG-AGUCGG--UGACaGCG--UugUACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 3702 0.72 0.484078
Target:  5'- --gCGGCCACgcagCGCGACGUGccACGCg -3'
miRNA:   3'- cgaGUCGGUGaca-GCGUUGUAC--UGCG- -5'
11439 3' -52.2 NC_003085.1 + 14932 0.72 0.473606
Target:  5'- cGCUCgcGGCCGCUGU-GUuGC-UGACGCu -3'
miRNA:   3'- -CGAG--UCGGUGACAgCGuUGuACUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.