Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11440 | 3' | -57.4 | NC_003085.1 | + | 22721 | 0.68 | 0.483519 |
Target: 5'- gGcCGCCggUUGAGUGACagcacCGGCGCCg -3' miRNA: 3'- gCaGCGG--AGCUUACUGca---GCCGCGGa -5' |
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11440 | 3' | -57.4 | NC_003085.1 | + | 33097 | 0.68 | 0.483519 |
Target: 5'- cCG-CGCCUgGAAUG-CcUCGGUGCCc -3' miRNA: 3'- -GCaGCGGAgCUUACuGcAGCCGCGGa -5' |
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11440 | 3' | -57.4 | NC_003085.1 | + | 26704 | 0.68 | 0.490576 |
Target: 5'- ---gGCaCUCGAgcgcgcgcagggcgGUGACGgcgCGGCGCCg -3' miRNA: 3'- gcagCG-GAGCU--------------UACUGCa--GCCGCGGa -5' |
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11440 | 3' | -57.4 | NC_003085.1 | + | 45969 | 0.68 | 0.493615 |
Target: 5'- gCGUCGCCUUGg--GGCGgcagaUGcGCGCCUc -3' miRNA: 3'- -GCAGCGGAGCuuaCUGCa----GC-CGCGGA- -5' |
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11440 | 3' | -57.4 | NC_003085.1 | + | 33386 | 0.69 | 0.406708 |
Target: 5'- uGcCGCCUCGGAUGGaGUCGGUGa-- -3' miRNA: 3'- gCaGCGGAGCUUACUgCAGCCGCgga -5' |
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11440 | 3' | -57.4 | NC_003085.1 | + | 21799 | 0.69 | 0.433682 |
Target: 5'- aCGUCGCCgccguagUCG-GUGGCGaugCGGCGUCc -3' miRNA: 3'- -GCAGCGG-------AGCuUACUGCa--GCCGCGGa -5' |
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11440 | 3' | -57.4 | NC_003085.1 | + | 44152 | 0.69 | 0.41589 |
Target: 5'- gGUCGCCUUcag-GACGgCGcGCGCCUu -3' miRNA: 3'- gCAGCGGAGcuuaCUGCaGC-CGCGGA- -5' |
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11440 | 3' | -57.4 | NC_003085.1 | + | 26114 | 0.7 | 0.37128 |
Target: 5'- uG-CGCCUCGGcgGcCGgCGGCGCUUg -3' miRNA: 3'- gCaGCGGAGCUuaCuGCaGCCGCGGA- -5' |
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11440 | 3' | -57.4 | NC_003085.1 | + | 47915 | 0.72 | 0.285155 |
Target: 5'- gCGUCGUCUCGcacucAGUGACGagucgcugguacUCGGCuGCCUc -3' miRNA: 3'- -GCAGCGGAGC-----UUACUGC------------AGCCG-CGGA- -5' |
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11440 | 3' | -57.4 | NC_003085.1 | + | 26697 | 0.73 | 0.239038 |
Target: 5'- cCGUCGCCaccgCGGcgGGCGucgUCGGCGCg- -3' miRNA: 3'- -GCAGCGGa---GCUuaCUGC---AGCCGCGga -5' |
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11440 | 3' | -57.4 | NC_003085.1 | + | 33018 | 1.08 | 0.000714 |
Target: 5'- cCGUCGCCUCGAAUGACGUCGGCGCCUg -3' miRNA: 3'- -GCAGCGGAGCUUACUGCAGCCGCGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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