miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11440 3' -57.4 NC_003085.1 + 32414 0.67 0.534899
Target:  5'- uCGaCGcCCUCGAAgcuccgGAgGUUGGCGUCa -3'
miRNA:   3'- -GCaGC-GGAGCUUa-----CUgCAGCCGCGGa -5'
11440 3' -57.4 NC_003085.1 + 33018 1.08 0.000714
Target:  5'- cCGUCGCCUCGAAUGACGUCGGCGCCUg -3'
miRNA:   3'- -GCAGCGGAGCUUACUGCAGCCGCGGA- -5'
11440 3' -57.4 NC_003085.1 + 33097 0.68 0.483519
Target:  5'- cCG-CGCCUgGAAUG-CcUCGGUGCCc -3'
miRNA:   3'- -GCaGCGGAgCUUACuGcAGCCGCGGa -5'
11440 3' -57.4 NC_003085.1 + 33386 0.69 0.406708
Target:  5'- uGcCGCCUCGGAUGGaGUCGGUGa-- -3'
miRNA:   3'- gCaGCGGAGCUUACUgCAGCCGCgga -5'
11440 3' -57.4 NC_003085.1 + 35917 0.66 0.577333
Target:  5'- -cUCGCCUCGGuGUGAaccCGUCGGgGUa- -3'
miRNA:   3'- gcAGCGGAGCU-UACU---GCAGCCgCGga -5'
11440 3' -57.4 NC_003085.1 + 42093 0.68 0.444182
Target:  5'- cCGUCgGCCUCGuacUGGag-CGGCGCCc -3'
miRNA:   3'- -GCAG-CGGAGCuu-ACUgcaGCCGCGGa -5'
11440 3' -57.4 NC_003085.1 + 44081 0.67 0.514088
Target:  5'- gCGUagGCCUCGAcgGUGACGggacCGgacGCGCCg -3'
miRNA:   3'- -GCAg-CGGAGCU--UACUGCa---GC---CGCGGa -5'
11440 3' -57.4 NC_003085.1 + 44152 0.69 0.41589
Target:  5'- gGUCGCCUUcag-GACGgCGcGCGCCUu -3'
miRNA:   3'- gCAGCGGAGcuuaCUGCaGC-CGCGGA- -5'
11440 3' -57.4 NC_003085.1 + 45969 0.68 0.493615
Target:  5'- gCGUCGCCUUGg--GGCGgcagaUGcGCGCCUc -3'
miRNA:   3'- -GCAGCGGAGCuuaCUGCa----GC-CGCGGA- -5'
11440 3' -57.4 NC_003085.1 + 47915 0.72 0.285155
Target:  5'- gCGUCGUCUCGcacucAGUGACGagucgcugguacUCGGCuGCCUc -3'
miRNA:   3'- -GCAGCGGAGC-----UUACUGC------------AGCCG-CGGA- -5'
11440 3' -57.4 NC_003085.1 + 48828 0.67 0.555999
Target:  5'- aG-CGCCUCGAc-GAgGUCcGCGCCa -3'
miRNA:   3'- gCaGCGGAGCUuaCUgCAGcCGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.