miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11441 5' -58.6 NC_003085.1 + 17792 0.67 0.440049
Target:  5'- uGACACCCcacauccaccgcccgCCcCGGUGCCGccugugCGGCa -3'
miRNA:   3'- gCUGUGGGaa-------------GGaGCCGCGGCa-----GUCG- -5'
11441 5' -58.6 NC_003085.1 + 46064 0.67 0.481903
Target:  5'- -uGCACCCgccCUUCGGCGCUcaGUC-GCc -3'
miRNA:   3'- gcUGUGGGaa-GGAGCCGCGG--CAGuCG- -5'
11441 5' -58.6 NC_003085.1 + 25282 0.67 0.462186
Target:  5'- uCGGCGCUggagaugacgUCCUgUGGgGCCGUCGGUa -3'
miRNA:   3'- -GCUGUGGga--------AGGA-GCCgCGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 25710 0.67 0.462186
Target:  5'- aGGCugCCUcucaccgacgugUCCuUCGGCGCCa-CGGUg -3'
miRNA:   3'- gCUGugGGA------------AGG-AGCCGCGGcaGUCG- -5'
11441 5' -58.6 NC_003085.1 + 45541 0.67 0.452488
Target:  5'- gCGGCGCUcggCUUCCaguucgaGGCGUCG-CAGCa -3'
miRNA:   3'- -GCUGUGG---GAAGGag-----CCGCGGCaGUCG- -5'
11441 5' -58.6 NC_003085.1 + 5880 0.67 0.481903
Target:  5'- gCGAC-CUCUgCCgUGGCGCCGggUCGGUg -3'
miRNA:   3'- -GCUGuGGGAaGGaGCCGCGGC--AGUCG- -5'
11441 5' -58.6 NC_003085.1 + 7019 0.67 0.481903
Target:  5'- cCGGCGCCCUcaaggcCCUCGcGCGggGUgGGCg -3'
miRNA:   3'- -GCUGUGGGAa-----GGAGC-CGCggCAgUCG- -5'
11441 5' -58.6 NC_003085.1 + 31451 0.68 0.405745
Target:  5'- uGGCACguaCggCCUC-GCGCCGUCGGa -3'
miRNA:   3'- gCUGUGg--GaaGGAGcCGCGGCAGUCg -5'
11441 5' -58.6 NC_003085.1 + 44787 0.68 0.433432
Target:  5'- aGGCGCaa---CUCGGCGCCGUgaaaGGCu -3'
miRNA:   3'- gCUGUGggaagGAGCCGCGGCAg---UCG- -5'
11441 5' -58.6 NC_003085.1 + 40378 0.68 0.433432
Target:  5'- gCGGCGCUgacgCCUCuGGCGCUGgcCGGCa -3'
miRNA:   3'- -GCUGUGGgaa-GGAG-CCGCGGCa-GUCG- -5'
11441 5' -58.6 NC_003085.1 + 29720 0.68 0.42408
Target:  5'- uCGuCGCUa--CCUCGGCGUCGUC-GCc -3'
miRNA:   3'- -GCuGUGGgaaGGAGCCGCGGCAGuCG- -5'
11441 5' -58.6 NC_003085.1 + 24578 0.68 0.433432
Target:  5'- aGGCgGCCCUggaaCUgGGCGCCG-CuGCa -3'
miRNA:   3'- gCUG-UGGGAag--GAgCCGCGGCaGuCG- -5'
11441 5' -58.6 NC_003085.1 + 26316 0.68 0.432491
Target:  5'- gCGACACCaCcUgCUCGaagcucuGCGCCGUCuuGCg -3'
miRNA:   3'- -GCUGUGG-GaAgGAGC-------CGCGGCAGu-CG- -5'
11441 5' -58.6 NC_003085.1 + 35905 0.68 0.42408
Target:  5'- aCGcGCGCCUUgcucgCCUCGGUGugaacCCGUCGGg -3'
miRNA:   3'- -GC-UGUGGGAa----GGAGCCGC-----GGCAGUCg -5'
11441 5' -58.6 NC_003085.1 + 2243 0.68 0.42408
Target:  5'- gGAUGCCa-UCCUCcGCGCCcGUCuGCa -3'
miRNA:   3'- gCUGUGGgaAGGAGcCGCGG-CAGuCG- -5'
11441 5' -58.6 NC_003085.1 + 24388 0.68 0.423151
Target:  5'- gCGACACCCUUCagguagaugaaCUCGGCcgcGCCGaacaccggguccuUCGcGCg -3'
miRNA:   3'- -GCUGUGGGAAG-----------GAGCCG---CGGC-------------AGU-CG- -5'
11441 5' -58.6 NC_003085.1 + 25239 0.68 0.422224
Target:  5'- gCGcCGCCCUggugcgcUCCgCGGCgggcgucGUCGUCGGCg -3'
miRNA:   3'- -GCuGUGGGA-------AGGaGCCG-------CGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 48513 0.68 0.396766
Target:  5'- gCGACcUCCUU-CUCGGCGgCGagGGCg -3'
miRNA:   3'- -GCUGuGGGAAgGAGCCGCgGCagUCG- -5'
11441 5' -58.6 NC_003085.1 + 20334 0.68 0.405745
Target:  5'- gGAUgaACUCUgggCCaCGGCGCC-UCAGCg -3'
miRNA:   3'- gCUG--UGGGAa--GGaGCCGCGGcAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 35627 0.68 0.41485
Target:  5'- cCGGCACUUc-CCUgGGCGgCGUCuGCa -3'
miRNA:   3'- -GCUGUGGGaaGGAgCCGCgGCAGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.