miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11441 5' -58.6 NC_003085.1 + 14629 0.66 0.553779
Target:  5'- uGACGCCU--UCUUGacGCGCUcgGUCAGCg -3'
miRNA:   3'- gCUGUGGGaaGGAGC--CGCGG--CAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 15826 0.66 0.542236
Target:  5'- cCGugGCCCUcuucgCCUguggUGGCccagacuucgaagGCCGUUGGCg -3'
miRNA:   3'- -GCugUGGGAa----GGA----GCCG-------------CGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 17041 0.73 0.199818
Target:  5'- aCGACGCCC-UCCUUGGCGagGUCuuccacgauGGCa -3'
miRNA:   3'- -GCUGUGGGaAGGAGCCGCggCAG---------UCG- -5'
11441 5' -58.6 NC_003085.1 + 17792 0.67 0.440049
Target:  5'- uGACACCCcacauccaccgcccgCCcCGGUGCCGccugugCGGCa -3'
miRNA:   3'- gCUGUGGGaa-------------GGaGCCGCGGCa-----GUCG- -5'
11441 5' -58.6 NC_003085.1 + 20334 0.68 0.405745
Target:  5'- gGAUgaACUCUgggCCaCGGCGCC-UCAGCg -3'
miRNA:   3'- gCUG--UGGGAa--GGaGCCGCGGcAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 20809 0.66 0.531812
Target:  5'- gGACGCCCUUCCcCgccuccaggaaggGGUaucgaaagGCCGgccgCAGCa -3'
miRNA:   3'- gCUGUGGGAAGGaG-------------CCG--------CGGCa---GUCG- -5'
11441 5' -58.6 NC_003085.1 + 20825 0.66 0.532852
Target:  5'- gGACGCCa-UCCUggaugaggcgacCGGCGCCG--AGCu -3'
miRNA:   3'- gCUGUGGgaAGGA------------GCCGCGGCagUCG- -5'
11441 5' -58.6 NC_003085.1 + 22109 0.71 0.258159
Target:  5'- aGGcCGCCCagcagagCC-CGGCGCCG-CAGCa -3'
miRNA:   3'- gCU-GUGGGaa-----GGaGCCGCGGCaGUCG- -5'
11441 5' -58.6 NC_003085.1 + 22766 0.7 0.329702
Target:  5'- aCGACGCCCg-CCgCGGUGgCGaCGGCa -3'
miRNA:   3'- -GCUGUGGGaaGGaGCCGCgGCaGUCG- -5'
11441 5' -58.6 NC_003085.1 + 23543 0.72 0.251748
Target:  5'- aGAUGCUCcUCCagGGCGCUGcUCGGCg -3'
miRNA:   3'- gCUGUGGGaAGGagCCGCGGC-AGUCG- -5'
11441 5' -58.6 NC_003085.1 + 24074 0.66 0.501004
Target:  5'- gCGACAUCUggaCgaCGGUgaagcccGCCGUCGGCg -3'
miRNA:   3'- -GCUGUGGGaa-GgaGCCG-------CGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 24214 0.66 0.504051
Target:  5'- aCGACGCCCgccgcggagcgcaCCagggCGGCGCCGgugaugagguacCAGCc -3'
miRNA:   3'- -GCUGUGGGaa-----------GGa---GCCGCGGCa-----------GUCG- -5'
11441 5' -58.6 NC_003085.1 + 24388 0.68 0.423151
Target:  5'- gCGACACCCUUCagguagaugaaCUCGGCcgcGCCGaacaccggguccuUCGcGCg -3'
miRNA:   3'- -GCUGUGGGAAG-----------GAGCCG---CGGC-------------AGU-CG- -5'
11441 5' -58.6 NC_003085.1 + 24456 0.66 0.553779
Target:  5'- uGugGCCCUUCU--GGCGCuCG-CAGg -3'
miRNA:   3'- gCugUGGGAAGGagCCGCG-GCaGUCg -5'
11441 5' -58.6 NC_003085.1 + 24578 0.68 0.433432
Target:  5'- aGGCgGCCCUggaaCUgGGCGCCG-CuGCa -3'
miRNA:   3'- gCUG-UGGGAag--GAgCCGCGGCaGuCG- -5'
11441 5' -58.6 NC_003085.1 + 24885 0.66 0.553779
Target:  5'- gCGGCGCCCagUUCCagGGCcgccucaucGCCGaguaaCAGCg -3'
miRNA:   3'- -GCUGUGGG--AAGGagCCG---------CGGCa----GUCG- -5'
11441 5' -58.6 NC_003085.1 + 25239 0.68 0.422224
Target:  5'- gCGcCGCCCUggugcgcUCCgCGGCgggcgucGUCGUCGGCg -3'
miRNA:   3'- -GCuGUGGGA-------AGGaGCCG-------CGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 25282 0.67 0.462186
Target:  5'- uCGGCGCUggagaugacgUCCUgUGGgGCCGUCGGUa -3'
miRNA:   3'- -GCUGUGGga--------AGGA-GCCgCGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 25710 0.67 0.462186
Target:  5'- aGGCugCCUcucaccgacgugUCCuUCGGCGCCa-CGGUg -3'
miRNA:   3'- gCUGugGGA------------AGG-AGCCGCGGcaGUCG- -5'
11441 5' -58.6 NC_003085.1 + 26110 0.7 0.299444
Target:  5'- gGGCugCg--CCUCGGCGgCCGgCGGCg -3'
miRNA:   3'- gCUGugGgaaGGAGCCGC-GGCaGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.