miRNA display CGI


Results 1 - 20 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11441 5' -58.6 NC_003085.1 + 2082 0.73 0.198259
Target:  5'- uGACGCgacgagcgcagccgCCgcaCCUCGGCGCCaUCGGCg -3'
miRNA:   3'- gCUGUG--------------GGaa-GGAGCCGCGGcAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 2243 0.68 0.42408
Target:  5'- gGAUGCCa-UCCUCcGCGCCcGUCuGCa -3'
miRNA:   3'- gCUGUGGgaAGGAGcCGCGG-CAGuCG- -5'
11441 5' -58.6 NC_003085.1 + 4427 0.67 0.442902
Target:  5'- cCGGUGCCCgacggugcUCCUCaccGuCGCCGUCGGCg -3'
miRNA:   3'- -GCUGUGGGa-------AGGAGc--C-GCGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 4669 0.68 0.387916
Target:  5'- aGGCgaGCCUUUCa-CGGCGCCGaguugcgccucgUCGGCg -3'
miRNA:   3'- gCUG--UGGGAAGgaGCCGCGGC------------AGUCG- -5'
11441 5' -58.6 NC_003085.1 + 5880 0.67 0.481903
Target:  5'- gCGAC-CUCUgCCgUGGCGCCGggUCGGUg -3'
miRNA:   3'- -GCUGuGGGAaGGaGCCGCGGC--AGUCG- -5'
11441 5' -58.6 NC_003085.1 + 5933 0.73 0.199297
Target:  5'- gGACGCgCCgcCUUCGGCGCCGUUcccguccacgccgGGCu -3'
miRNA:   3'- gCUGUG-GGaaGGAGCCGCGGCAG-------------UCG- -5'
11441 5' -58.6 NC_003085.1 + 6745 0.69 0.37061
Target:  5'- cCGACGCCCacgCCUgaGGUGCCG-CcGCu -3'
miRNA:   3'- -GCUGUGGGaa-GGAg-CCGCGGCaGuCG- -5'
11441 5' -58.6 NC_003085.1 + 6748 0.67 0.452488
Target:  5'- cCGACuGCCCggCCUgCcGCGCCGU-GGCg -3'
miRNA:   3'- -GCUG-UGGGaaGGA-GcCGCGGCAgUCG- -5'
11441 5' -58.6 NC_003085.1 + 6874 0.7 0.330487
Target:  5'- gGAUACCaCUUCCaCGGCGacauugaggccaucgCGUCAGCc -3'
miRNA:   3'- gCUGUGG-GAAGGaGCCGCg--------------GCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 7019 0.67 0.481903
Target:  5'- cCGGCGCCCUcaaggcCCUCGcGCGggGUgGGCg -3'
miRNA:   3'- -GCUGUGGGAa-----GGAGC-CGCggCAgUCG- -5'
11441 5' -58.6 NC_003085.1 + 7445 0.66 0.543282
Target:  5'- aGGCGCCCUcgUCCgugcCGaCGCCGcCGGg -3'
miRNA:   3'- gCUGUGGGA--AGGa---GCcGCGGCaGUCg -5'
11441 5' -58.6 NC_003085.1 + 8535 0.66 0.502019
Target:  5'- aGGCACCU---CUCGGCGCg--CGGCg -3'
miRNA:   3'- gCUGUGGGaagGAGCCGCGgcaGUCG- -5'
11441 5' -58.6 NC_003085.1 + 8669 0.69 0.337611
Target:  5'- gCGugGCCUUgggcgCCggGGUGCCGUCcGCc -3'
miRNA:   3'- -GCugUGGGAa----GGagCCGCGGCAGuCG- -5'
11441 5' -58.6 NC_003085.1 + 8724 0.7 0.311283
Target:  5'- gGACACCUccagugCCUcCGGCGCCGgcgagagguccacCGGCg -3'
miRNA:   3'- gCUGUGGGaa----GGA-GCCGCGGCa------------GUCG- -5'
11441 5' -58.6 NC_003085.1 + 9723 0.67 0.442902
Target:  5'- -aACGCCUgugugUCCUCGGCGUCauggaGUCcagGGCg -3'
miRNA:   3'- gcUGUGGGa----AGGAGCCGCGG-----CAG---UCG- -5'
11441 5' -58.6 NC_003085.1 + 9973 0.7 0.314298
Target:  5'- cCGGCuuCCgagcgCCUCGacGCGCaCGUCGGCa -3'
miRNA:   3'- -GCUGugGGaa---GGAGC--CGCG-GCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 10654 0.74 0.161738
Target:  5'- aGGCAgCCaaagUCCUCGGgGCUGcCGGCg -3'
miRNA:   3'- gCUGUgGGa---AGGAGCCgCGGCaGUCG- -5'
11441 5' -58.6 NC_003085.1 + 11529 0.69 0.378332
Target:  5'- cCGAUucucaaucaacagGCCCUgcgCgUCGgaaagaagggcaGCGCCGUCGGCg -3'
miRNA:   3'- -GCUG-------------UGGGAa--GgAGC------------CGCGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 12117 0.73 0.199818
Target:  5'- gGACGCCCccgaggCCuUCGGUGCCGacCGGCu -3'
miRNA:   3'- gCUGUGGGaa----GG-AGCCGCGGCa-GUCG- -5'
11441 5' -58.6 NC_003085.1 + 12222 0.68 0.405745
Target:  5'- gCGACGCCUg-CCUUGaGCGCgG-CGGCu -3'
miRNA:   3'- -GCUGUGGGaaGGAGC-CGCGgCaGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.