miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11441 5' -58.6 NC_003085.1 + 32960 1.12 0.000284
Target:  5'- cCGACACCCUUCCUCGGCGCCGUCAGCg -3'
miRNA:   3'- -GCUGUGGGAAGGAGCCGCGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 41810 0.76 0.116813
Target:  5'- uCGugGCCCaggaCUCGGCGCCGUUgauGCg -3'
miRNA:   3'- -GCugUGGGaag-GAGCCGCGGCAGu--CG- -5'
11441 5' -58.6 NC_003085.1 + 10654 0.74 0.161738
Target:  5'- aGGCAgCCaaagUCCUCGGgGCUGcCGGCg -3'
miRNA:   3'- gCUGUgGGa---AGGAGCCgCGGCaGUCG- -5'
11441 5' -58.6 NC_003085.1 + 45670 0.74 0.161738
Target:  5'- cCGuCGCCg--CUUCGGCGuCCGUCAGCc -3'
miRNA:   3'- -GCuGUGGgaaGGAGCCGC-GGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 41987 0.74 0.166114
Target:  5'- uGACACgCCUcgccguguUCCUgcccCGGCGgCGUCGGCa -3'
miRNA:   3'- gCUGUG-GGA--------AGGA----GCCGCgGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 2082 0.73 0.198259
Target:  5'- uGACGCgacgagcgcagccgCCgcaCCUCGGCGCCaUCGGCg -3'
miRNA:   3'- gCUGUG--------------GGaa-GGAGCCGCGGcAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 5933 0.73 0.199297
Target:  5'- gGACGCgCCgcCUUCGGCGCCGUUcccguccacgccgGGCu -3'
miRNA:   3'- gCUGUG-GGaaGGAGCCGCGGCAG-------------UCG- -5'
11441 5' -58.6 NC_003085.1 + 17041 0.73 0.199818
Target:  5'- aCGACGCCC-UCCUUGGCGagGUCuuccacgauGGCa -3'
miRNA:   3'- -GCUGUGGGaAGGAGCCGCggCAG---------UCG- -5'
11441 5' -58.6 NC_003085.1 + 12117 0.73 0.199818
Target:  5'- gGACGCCCccgaggCCuUCGGUGCCGacCGGCu -3'
miRNA:   3'- gCUGUGGGaa----GG-AGCCGCGGCa-GUCG- -5'
11441 5' -58.6 NC_003085.1 + 35126 0.72 0.232706
Target:  5'- cCGGC-CCCUcgucuucUCCugccuUCGGUGCCGUCuGGCg -3'
miRNA:   3'- -GCUGuGGGA-------AGG-----AGCCGCGGCAG-UCG- -5'
11441 5' -58.6 NC_003085.1 + 36747 0.72 0.233301
Target:  5'- gCGcUACCUccCCUCGGCcgccggccucGCCGUCGGCg -3'
miRNA:   3'- -GCuGUGGGaaGGAGCCG----------CGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 32456 0.72 0.238713
Target:  5'- -aGCGCCCaUCCgcgcuucUCGuCGCCGUCGGCg -3'
miRNA:   3'- gcUGUGGGaAGG-------AGCcGCGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 23543 0.72 0.251748
Target:  5'- aGAUGCUCcUCCagGGCGCUGcUCGGCg -3'
miRNA:   3'- gCUGUGGGaAGGagCCGCGGC-AGUCG- -5'
11441 5' -58.6 NC_003085.1 + 33098 0.72 0.251748
Target:  5'- -cGCGCCUggaaugCCUCGGUGCCcuugucGUCGGCc -3'
miRNA:   3'- gcUGUGGGaa----GGAGCCGCGG------CAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 22109 0.71 0.258159
Target:  5'- aGGcCGCCCagcagagCC-CGGCGCCG-CAGCa -3'
miRNA:   3'- gCU-GUGGGaa-----GGaGCCGCGGCaGUCG- -5'
11441 5' -58.6 NC_003085.1 + 28858 0.71 0.285139
Target:  5'- gCGcCGCCCgacuUCCgCGGCGCUGccgagCAGCa -3'
miRNA:   3'- -GCuGUGGGa---AGGaGCCGCGGCa----GUCG- -5'
11441 5' -58.6 NC_003085.1 + 43352 0.7 0.292223
Target:  5'- --cCGCCCUUCg-CGGCGUCGUaGGCg -3'
miRNA:   3'- gcuGUGGGAAGgaGCCGCGGCAgUCG- -5'
11441 5' -58.6 NC_003085.1 + 26110 0.7 0.299444
Target:  5'- gGGCugCg--CCUCGGCGgCCGgCGGCg -3'
miRNA:   3'- gCUGugGgaaGGAGCCGC-GGCaGUCG- -5'
11441 5' -58.6 NC_003085.1 + 43256 0.7 0.30606
Target:  5'- gGugACCCacuggaguagguaUUUgUCGGCaCCGUCGGCa -3'
miRNA:   3'- gCugUGGG-------------AAGgAGCCGcGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 8724 0.7 0.311283
Target:  5'- gGACACCUccagugCCUcCGGCGCCGgcgagagguccacCGGCg -3'
miRNA:   3'- gCUGUGGGaa----GGA-GCCGCGGCa------------GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.