miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11441 5' -58.6 NC_003085.1 + 4427 0.67 0.442902
Target:  5'- cCGGUGCCCgacggugcUCCUCaccGuCGCCGUCGGCg -3'
miRNA:   3'- -GCUGUGGGa-------AGGAGc--C-GCGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 48513 0.68 0.396766
Target:  5'- gCGACcUCCUU-CUCGGCGgCGagGGCg -3'
miRNA:   3'- -GCUGuGGGAAgGAGCCGCgGCagUCG- -5'
11441 5' -58.6 NC_003085.1 + 20334 0.68 0.405745
Target:  5'- gGAUgaACUCUgggCCaCGGCGCC-UCAGCg -3'
miRNA:   3'- gCUG--UGGGAa--GGaGCCGCGGcAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 31451 0.68 0.405745
Target:  5'- uGGCACguaCggCCUC-GCGCCGUCGGa -3'
miRNA:   3'- gCUGUGg--GaaGGAGcCGCGGCAGUCg -5'
11441 5' -58.6 NC_003085.1 + 25239 0.68 0.422224
Target:  5'- gCGcCGCCCUggugcgcUCCgCGGCgggcgucGUCGUCGGCg -3'
miRNA:   3'- -GCuGUGGGA-------AGGaGCCG-------CGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 29720 0.68 0.42408
Target:  5'- uCGuCGCUa--CCUCGGCGUCGUC-GCc -3'
miRNA:   3'- -GCuGUGGgaaGGAGCCGCGGCAGuCG- -5'
11441 5' -58.6 NC_003085.1 + 40378 0.68 0.433432
Target:  5'- gCGGCGCUgacgCCUCuGGCGCUGgcCGGCa -3'
miRNA:   3'- -GCUGUGGgaa-GGAG-CCGCGGCa-GUCG- -5'
11441 5' -58.6 NC_003085.1 + 44787 0.68 0.433432
Target:  5'- aGGCGCaa---CUCGGCGCCGUgaaaGGCu -3'
miRNA:   3'- gCUGUGggaagGAGCCGCGGCAg---UCG- -5'
11441 5' -58.6 NC_003085.1 + 17792 0.67 0.440049
Target:  5'- uGACACCCcacauccaccgcccgCCcCGGUGCCGccugugCGGCa -3'
miRNA:   3'- gCUGUGGGaa-------------GGaGCCGCGGCa-----GUCG- -5'
11441 5' -58.6 NC_003085.1 + 39145 0.69 0.353839
Target:  5'- uGACGCCCUggcaaagggCUaCGGCGUCGUCuGg -3'
miRNA:   3'- gCUGUGGGAa--------GGaGCCGCGGCAGuCg -5'
11441 5' -58.6 NC_003085.1 + 22766 0.7 0.329702
Target:  5'- aCGACGCCCg-CCgCGGUGgCGaCGGCa -3'
miRNA:   3'- -GCUGUGGGaaGGaGCCGCgGCaGUCG- -5'
11441 5' -58.6 NC_003085.1 + 43352 0.7 0.292223
Target:  5'- --cCGCCCUUCg-CGGCGUCGUaGGCg -3'
miRNA:   3'- gcuGUGGGAAGgaGCCGCGGCAgUCG- -5'
11441 5' -58.6 NC_003085.1 + 45670 0.74 0.161738
Target:  5'- cCGuCGCCg--CUUCGGCGuCCGUCAGCc -3'
miRNA:   3'- -GCuGUGGgaaGGAGCCGC-GGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 41987 0.74 0.166114
Target:  5'- uGACACgCCUcgccguguUCCUgcccCGGCGgCGUCGGCa -3'
miRNA:   3'- gCUGUG-GGA--------AGGA----GCCGCgGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 2082 0.73 0.198259
Target:  5'- uGACGCgacgagcgcagccgCCgcaCCUCGGCGCCaUCGGCg -3'
miRNA:   3'- gCUGUG--------------GGaa-GGAGCCGCGGcAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 12117 0.73 0.199818
Target:  5'- gGACGCCCccgaggCCuUCGGUGCCGacCGGCu -3'
miRNA:   3'- gCUGUGGGaa----GG-AGCCGCGGCa-GUCG- -5'
11441 5' -58.6 NC_003085.1 + 36747 0.72 0.233301
Target:  5'- gCGcUACCUccCCUCGGCcgccggccucGCCGUCGGCg -3'
miRNA:   3'- -GCuGUGGGaaGGAGCCG----------CGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 23543 0.72 0.251748
Target:  5'- aGAUGCUCcUCCagGGCGCUGcUCGGCg -3'
miRNA:   3'- gCUGUGGGaAGGagCCGCGGC-AGUCG- -5'
11441 5' -58.6 NC_003085.1 + 22109 0.71 0.258159
Target:  5'- aGGcCGCCCagcagagCC-CGGCGCCG-CAGCa -3'
miRNA:   3'- gCU-GUGGGaa-----GGaGCCGCGGCaGUCG- -5'
11441 5' -58.6 NC_003085.1 + 28858 0.71 0.285139
Target:  5'- gCGcCGCCCgacuUCCgCGGCGCUGccgagCAGCa -3'
miRNA:   3'- -GCuGUGGGa---AGGaGCCGCGGCa----GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.