Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11441 | 5' | -58.6 | NC_003085.1 | + | 4427 | 0.67 | 0.442902 |
Target: 5'- cCGGUGCCCgacggugcUCCUCaccGuCGCCGUCGGCg -3' miRNA: 3'- -GCUGUGGGa-------AGGAGc--C-GCGGCAGUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 48513 | 0.68 | 0.396766 |
Target: 5'- gCGACcUCCUU-CUCGGCGgCGagGGCg -3' miRNA: 3'- -GCUGuGGGAAgGAGCCGCgGCagUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 20334 | 0.68 | 0.405745 |
Target: 5'- gGAUgaACUCUgggCCaCGGCGCC-UCAGCg -3' miRNA: 3'- gCUG--UGGGAa--GGaGCCGCGGcAGUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 31451 | 0.68 | 0.405745 |
Target: 5'- uGGCACguaCggCCUC-GCGCCGUCGGa -3' miRNA: 3'- gCUGUGg--GaaGGAGcCGCGGCAGUCg -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 25239 | 0.68 | 0.422224 |
Target: 5'- gCGcCGCCCUggugcgcUCCgCGGCgggcgucGUCGUCGGCg -3' miRNA: 3'- -GCuGUGGGA-------AGGaGCCG-------CGGCAGUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 29720 | 0.68 | 0.42408 |
Target: 5'- uCGuCGCUa--CCUCGGCGUCGUC-GCc -3' miRNA: 3'- -GCuGUGGgaaGGAGCCGCGGCAGuCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 40378 | 0.68 | 0.433432 |
Target: 5'- gCGGCGCUgacgCCUCuGGCGCUGgcCGGCa -3' miRNA: 3'- -GCUGUGGgaa-GGAG-CCGCGGCa-GUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 44787 | 0.68 | 0.433432 |
Target: 5'- aGGCGCaa---CUCGGCGCCGUgaaaGGCu -3' miRNA: 3'- gCUGUGggaagGAGCCGCGGCAg---UCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 17792 | 0.67 | 0.440049 |
Target: 5'- uGACACCCcacauccaccgcccgCCcCGGUGCCGccugugCGGCa -3' miRNA: 3'- gCUGUGGGaa-------------GGaGCCGCGGCa-----GUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 39145 | 0.69 | 0.353839 |
Target: 5'- uGACGCCCUggcaaagggCUaCGGCGUCGUCuGg -3' miRNA: 3'- gCUGUGGGAa--------GGaGCCGCGGCAGuCg -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 22766 | 0.7 | 0.329702 |
Target: 5'- aCGACGCCCg-CCgCGGUGgCGaCGGCa -3' miRNA: 3'- -GCUGUGGGaaGGaGCCGCgGCaGUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 43352 | 0.7 | 0.292223 |
Target: 5'- --cCGCCCUUCg-CGGCGUCGUaGGCg -3' miRNA: 3'- gcuGUGGGAAGgaGCCGCGGCAgUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 45670 | 0.74 | 0.161738 |
Target: 5'- cCGuCGCCg--CUUCGGCGuCCGUCAGCc -3' miRNA: 3'- -GCuGUGGgaaGGAGCCGC-GGCAGUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 41987 | 0.74 | 0.166114 |
Target: 5'- uGACACgCCUcgccguguUCCUgcccCGGCGgCGUCGGCa -3' miRNA: 3'- gCUGUG-GGA--------AGGA----GCCGCgGCAGUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 2082 | 0.73 | 0.198259 |
Target: 5'- uGACGCgacgagcgcagccgCCgcaCCUCGGCGCCaUCGGCg -3' miRNA: 3'- gCUGUG--------------GGaa-GGAGCCGCGGcAGUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 12117 | 0.73 | 0.199818 |
Target: 5'- gGACGCCCccgaggCCuUCGGUGCCGacCGGCu -3' miRNA: 3'- gCUGUGGGaa----GG-AGCCGCGGCa-GUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 36747 | 0.72 | 0.233301 |
Target: 5'- gCGcUACCUccCCUCGGCcgccggccucGCCGUCGGCg -3' miRNA: 3'- -GCuGUGGGaaGGAGCCG----------CGGCAGUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 23543 | 0.72 | 0.251748 |
Target: 5'- aGAUGCUCcUCCagGGCGCUGcUCGGCg -3' miRNA: 3'- gCUGUGGGaAGGagCCGCGGC-AGUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 22109 | 0.71 | 0.258159 |
Target: 5'- aGGcCGCCCagcagagCC-CGGCGCCG-CAGCa -3' miRNA: 3'- gCU-GUGGGaa-----GGaGCCGCGGCaGUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 28858 | 0.71 | 0.285139 |
Target: 5'- gCGcCGCCCgacuUCCgCGGCGCUGccgagCAGCa -3' miRNA: 3'- -GCuGUGGGa---AGGaGCCGCGGCa----GUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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