miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11441 5' -58.6 NC_003085.1 + 37343 0.66 0.553779
Target:  5'- uCGGCACCgaaggCCUCGGgGgCGUCcgacuuGCg -3'
miRNA:   3'- -GCUGUGGgaa--GGAGCCgCgGCAGu-----CG- -5'
11441 5' -58.6 NC_003085.1 + 35905 0.68 0.42408
Target:  5'- aCGcGCGCCUUgcucgCCUCGGUGugaacCCGUCGGg -3'
miRNA:   3'- -GC-UGUGGGAa----GGAGCCGC-----GGCAGUCg -5'
11441 5' -58.6 NC_003085.1 + 24388 0.68 0.423151
Target:  5'- gCGACACCCUUCagguagaugaaCUCGGCcgcGCCGaacaccggguccuUCGcGCg -3'
miRNA:   3'- -GCUGUGGGAAG-----------GAGCCG---CGGC-------------AGU-CG- -5'
11441 5' -58.6 NC_003085.1 + 32960 1.12 0.000284
Target:  5'- cCGACACCCUUCCUCGGCGCCGUCAGCg -3'
miRNA:   3'- -GCUGUGGGAAGGAGCCGCGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 20809 0.66 0.531812
Target:  5'- gGACGCCCUUCCcCgccuccaggaaggGGUaucgaaagGCCGgccgCAGCa -3'
miRNA:   3'- gCUGUGGGAAGGaG-------------CCG--------CGGCa---GUCG- -5'
11441 5' -58.6 NC_003085.1 + 26697 0.66 0.512214
Target:  5'- cCGuCGCCa--CCgcggCgGGCGUCGUCGGCg -3'
miRNA:   3'- -GCuGUGGgaaGGa---G-CCGCGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 8535 0.66 0.502019
Target:  5'- aGGCACCU---CUCGGCGCg--CGGCg -3'
miRNA:   3'- gCUGUGGGaagGAGCCGCGgcaGUCG- -5'
11441 5' -58.6 NC_003085.1 + 24074 0.66 0.501004
Target:  5'- gCGACAUCUggaCgaCGGUgaagcccGCCGUCGGCg -3'
miRNA:   3'- -GCUGUGGGaa-GgaGCCG-------CGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 46064 0.67 0.481903
Target:  5'- -uGCACCCgccCUUCGGCGCUcaGUC-GCc -3'
miRNA:   3'- gcUGUGGGaa-GGAGCCGCGG--CAGuCG- -5'
11441 5' -58.6 NC_003085.1 + 26316 0.68 0.432491
Target:  5'- gCGACACCaCcUgCUCGaagcucuGCGCCGUCuuGCg -3'
miRNA:   3'- -GCUGUGG-GaAgGAGC-------CGCGGCAGu-CG- -5'
11441 5' -58.6 NC_003085.1 + 25710 0.67 0.462186
Target:  5'- aGGCugCCUcucaccgacgugUCCuUCGGCGCCa-CGGUg -3'
miRNA:   3'- gCUGugGGA------------AGG-AGCCGCGGcaGUCG- -5'
11441 5' -58.6 NC_003085.1 + 5880 0.67 0.481903
Target:  5'- gCGAC-CUCUgCCgUGGCGCCGggUCGGUg -3'
miRNA:   3'- -GCUGuGGGAaGGaGCCGCGGC--AGUCG- -5'
11441 5' -58.6 NC_003085.1 + 14629 0.66 0.553779
Target:  5'- uGACGCCU--UCUUGacGCGCUcgGUCAGCg -3'
miRNA:   3'- gCUGUGGGaaGGAGC--CGCGG--CAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 45541 0.67 0.452488
Target:  5'- gCGGCGCUcggCUUCCaguucgaGGCGUCG-CAGCa -3'
miRNA:   3'- -GCUGUGG---GAAGGag-----CCGCGGCaGUCG- -5'
11441 5' -58.6 NC_003085.1 + 7445 0.66 0.543282
Target:  5'- aGGCGCCCUcgUCCgugcCGaCGCCGcCGGg -3'
miRNA:   3'- gCUGUGGGA--AGGa---GCcGCGGCaGUCg -5'
11441 5' -58.6 NC_003085.1 + 42068 0.67 0.481903
Target:  5'- gGACucguGCCagUUCacgCgGGCGCCGUCGGCc -3'
miRNA:   3'- gCUG----UGGg-AAGga-G-CCGCGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 24578 0.68 0.433432
Target:  5'- aGGCgGCCCUggaaCUgGGCGCCG-CuGCa -3'
miRNA:   3'- gCUG-UGGGAag--GAgCCGCGGCaGuCG- -5'
11441 5' -58.6 NC_003085.1 + 2243 0.68 0.42408
Target:  5'- gGAUGCCa-UCCUCcGCGCCcGUCuGCa -3'
miRNA:   3'- gCUGUGGgaAGGAGcCGCGG-CAGuCG- -5'
11441 5' -58.6 NC_003085.1 + 15826 0.66 0.542236
Target:  5'- cCGugGCCCUcuucgCCUguggUGGCccagacuucgaagGCCGUUGGCg -3'
miRNA:   3'- -GCugUGGGAa----GGA----GCCG-------------CGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 24214 0.66 0.504051
Target:  5'- aCGACGCCCgccgcggagcgcaCCagggCGGCGCCGgugaugagguacCAGCc -3'
miRNA:   3'- -GCUGUGGGaa-----------GGa---GCCGCGGCa-----------GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.