miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11441 5' -58.6 NC_003085.1 + 48513 0.68 0.396766
Target:  5'- gCGACcUCCUU-CUCGGCGgCGagGGCg -3'
miRNA:   3'- -GCUGuGGGAAgGAGCCGCgGCagUCG- -5'
11441 5' -58.6 NC_003085.1 + 48142 0.66 0.553779
Target:  5'- gGGCugCCUccUCCagcgCGGCGUCGcgcUCAcGCu -3'
miRNA:   3'- gCUGugGGA--AGGa---GCCGCGGC---AGU-CG- -5'
11441 5' -58.6 NC_003085.1 + 46429 0.69 0.37061
Target:  5'- uCGACAgCCUUCgcgugcaccguCUgGGCGUCGUCcguGCg -3'
miRNA:   3'- -GCUGUgGGAAG-----------GAgCCGCGGCAGu--CG- -5'
11441 5' -58.6 NC_003085.1 + 46064 0.67 0.481903
Target:  5'- -uGCACCCgccCUUCGGCGCUcaGUC-GCc -3'
miRNA:   3'- gcUGUGGGaa-GGAGCCGCGG--CAGuCG- -5'
11441 5' -58.6 NC_003085.1 + 45670 0.74 0.161738
Target:  5'- cCGuCGCCg--CUUCGGCGuCCGUCAGCc -3'
miRNA:   3'- -GCuGUGGgaaGGAGCCGC-GGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 45541 0.67 0.452488
Target:  5'- gCGGCGCUcggCUUCCaguucgaGGCGUCG-CAGCa -3'
miRNA:   3'- -GCUGUGG---GAAGGag-----CCGCGGCaGUCG- -5'
11441 5' -58.6 NC_003085.1 + 45387 0.7 0.329702
Target:  5'- gGGCGCUCcaCCaggaggCGgaGCGCCGUCAGCg -3'
miRNA:   3'- gCUGUGGGaaGGa-----GC--CGCGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 44787 0.68 0.433432
Target:  5'- aGGCGCaa---CUCGGCGCCGUgaaaGGCu -3'
miRNA:   3'- gCUGUGggaagGAGCCGCGGCAg---UCG- -5'
11441 5' -58.6 NC_003085.1 + 44431 0.67 0.471993
Target:  5'- -aGCGCCaCcUCCUCgGGCGUCGUCGu- -3'
miRNA:   3'- gcUGUGG-GaAGGAG-CCGCGGCAGUcg -5'
11441 5' -58.6 NC_003085.1 + 43352 0.7 0.292223
Target:  5'- --cCGCCCUUCg-CGGCGUCGUaGGCg -3'
miRNA:   3'- gcuGUGGGAAGgaGCCGCGGCAgUCG- -5'
11441 5' -58.6 NC_003085.1 + 43256 0.7 0.30606
Target:  5'- gGugACCCacuggaguagguaUUUgUCGGCaCCGUCGGCa -3'
miRNA:   3'- gCugUGGG-------------AAGgAGCCGcGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 42068 0.67 0.481903
Target:  5'- gGACucguGCCagUUCacgCgGGCGCCGUCGGCc -3'
miRNA:   3'- gCUG----UGGg-AAGga-G-CCGCGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 41987 0.74 0.166114
Target:  5'- uGACACgCCUcgccguguUCCUgcccCGGCGgCGUCGGCa -3'
miRNA:   3'- gCUGUG-GGA--------AGGA----GCCGCgGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 41810 0.76 0.116813
Target:  5'- uCGugGCCCaggaCUCGGCGCCGUUgauGCg -3'
miRNA:   3'- -GCugUGGGaag-GAGCCGCGGCAGu--CG- -5'
11441 5' -58.6 NC_003085.1 + 40378 0.68 0.433432
Target:  5'- gCGGCGCUgacgCCUCuGGCGCUGgcCGGCa -3'
miRNA:   3'- -GCUGUGGgaa-GGAG-CCGCGGCa-GUCG- -5'
11441 5' -58.6 NC_003085.1 + 39885 0.68 0.41485
Target:  5'- aGACGCCggUgCUCGGCGgCGgcaGGCc -3'
miRNA:   3'- gCUGUGGgaAgGAGCCGCgGCag-UCG- -5'
11441 5' -58.6 NC_003085.1 + 39145 0.69 0.353839
Target:  5'- uGACGCCCUggcaaagggCUaCGGCGUCGUCuGg -3'
miRNA:   3'- gCUGUGGGAa--------GGaGCCGCGGCAGuCg -5'
11441 5' -58.6 NC_003085.1 + 38346 0.67 0.462186
Target:  5'- uGGCACgcgcaaCUUCCUgGGCacgaauGCCGcCGGCg -3'
miRNA:   3'- gCUGUGg-----GAAGGAgCCG------CGGCaGUCG- -5'
11441 5' -58.6 NC_003085.1 + 37343 0.66 0.553779
Target:  5'- uCGGCACCgaaggCCUCGGgGgCGUCcgacuuGCg -3'
miRNA:   3'- -GCUGUGGgaa--GGAGCCgCgGCAGu-----CG- -5'
11441 5' -58.6 NC_003085.1 + 37035 0.68 0.404841
Target:  5'- aCGACACagCC-UCCUCGGagcgcagcggcccCGCCGggucgagCAGCa -3'
miRNA:   3'- -GCUGUG--GGaAGGAGCC-------------GCGGCa------GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.