miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11443 3' -53.7 NC_003085.1 + 31310 0.66 0.796044
Target:  5'- cGCUucuucCGCCucGGGUccgucaccuugUCCGCG-CGGACGUa -3'
miRNA:   3'- -CGA-----GCGGu-CCCA-----------AGGUGCaGUUUGCA- -5'
11443 3' -53.7 NC_003085.1 + 25240 0.66 0.796043
Target:  5'- cGC-CGCCcuGGUgcgcUCCGCGgCGGGCGUc -3'
miRNA:   3'- -CGaGCGGucCCA----AGGUGCaGUUUGCA- -5'
11443 3' -53.7 NC_003085.1 + 22915 0.66 0.783096
Target:  5'- gGCU-GCCGGGGcgaagcccuccgaggCCGCGUCGAcggcGCGg -3'
miRNA:   3'- -CGAgCGGUCCCaa-------------GGUGCAGUU----UGCa -5'
11443 3' -53.7 NC_003085.1 + 8681 0.66 0.765759
Target:  5'- --gCGCCGGGGUgccguccgCCaACGUCAGccacACGa -3'
miRNA:   3'- cgaGCGGUCCCAa-------GG-UGCAGUU----UGCa -5'
11443 3' -53.7 NC_003085.1 + 7583 0.67 0.744841
Target:  5'- cGCUgCGUCAGGGcuaCACGUCGGcgcaccGCGa -3'
miRNA:   3'- -CGA-GCGGUCCCaagGUGCAGUU------UGCa -5'
11443 3' -53.7 NC_003085.1 + 45939 0.67 0.712613
Target:  5'- -gUCGCCAcGGG-UCCGCGUaGAGCu- -3'
miRNA:   3'- cgAGCGGU-CCCaAGGUGCAgUUUGca -5'
11443 3' -53.7 NC_003085.1 + 39052 0.67 0.701692
Target:  5'- uUUCGCCuGGGGUuuucauagcgugUCCACGUCuccuucGCGg -3'
miRNA:   3'- cGAGCGG-UCCCA------------AGGUGCAGuu----UGCa -5'
11443 3' -53.7 NC_003085.1 + 12319 0.67 0.690701
Target:  5'- --cCGCCAGGGUgcCCGcCGUCGccgugcccGGCGUg -3'
miRNA:   3'- cgaGCGGUCCCAa-GGU-GCAGU--------UUGCA- -5'
11443 3' -53.7 NC_003085.1 + 29913 0.7 0.53561
Target:  5'- gGUUCuCCAGGuucUCCGCGUCGGGCGc -3'
miRNA:   3'- -CGAGcGGUCCca-AGGUGCAGUUUGCa -5'
11443 3' -53.7 NC_003085.1 + 36502 0.7 0.514137
Target:  5'- aGCUCuGCCGGGGccUUCCggacGCGgcgCGGACGg -3'
miRNA:   3'- -CGAG-CGGUCCC--AAGG----UGCa--GUUUGCa -5'
11443 3' -53.7 NC_003085.1 + 7482 0.71 0.503532
Target:  5'- --aCGCUGGaGGUgacgggcgUCCGCGUCGAGCGg -3'
miRNA:   3'- cgaGCGGUC-CCA--------AGGUGCAGUUUGCa -5'
11443 3' -53.7 NC_003085.1 + 48257 0.72 0.413024
Target:  5'- cGCggCGCCGGGGUgaggUugGUCAAugGUc -3'
miRNA:   3'- -CGa-GCGGUCCCAag--GugCAGUUugCA- -5'
11443 3' -53.7 NC_003085.1 + 32124 1.09 0.001384
Target:  5'- gGCUCGCCAGGGUUCCACGUCAAACGUc -3'
miRNA:   3'- -CGAGCGGUCCCAAGGUGCAGUUUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.