miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11444 3' -58.2 NC_003085.1 + 40708 0.66 0.542689
Target:  5'- gGGUGCugGAcGCGCCGGuGGaccuCUCGCCGg- -3'
miRNA:   3'- gUCAUG--CU-CGCGGCC-CU----GAGCGGUac -5'
11444 3' -58.2 NC_003085.1 + 8647 0.66 0.542689
Target:  5'- aGGUACaGGCcgGCCGGGACgCG-CGUGg -3'
miRNA:   3'- gUCAUGcUCG--CGGCCCUGaGCgGUAC- -5'
11444 3' -58.2 NC_003085.1 + 32849 0.66 0.542689
Target:  5'- gAGgcCGcGCGCCgcGGGAC-CGCCcgGg -3'
miRNA:   3'- gUCauGCuCGCGG--CCCUGaGCGGuaC- -5'
11444 3' -58.2 NC_003085.1 + 45593 0.66 0.532138
Target:  5'- aCAGacgGCGGgcGCGCCGucGACgCGCCGUGg -3'
miRNA:   3'- -GUCa--UGCU--CGCGGCc-CUGaGCGGUAC- -5'
11444 3' -58.2 NC_003085.1 + 16041 0.66 0.511269
Target:  5'- --uUGCGGGCGagguaUGGGACgugCGCCAc- -3'
miRNA:   3'- gucAUGCUCGCg----GCCCUGa--GCGGUac -5'
11444 3' -58.2 NC_003085.1 + 13908 0.67 0.490747
Target:  5'- cCGGUGCGGcguGCGCgcguuucggaCGGGGCgcgCGCCGa- -3'
miRNA:   3'- -GUCAUGCU---CGCG----------GCCCUGa--GCGGUac -5'
11444 3' -58.2 NC_003085.1 + 40026 0.67 0.470615
Target:  5'- ---cAUGAGCGCCGGcACguccgCGUCGUGg -3'
miRNA:   3'- gucaUGCUCGCGGCCcUGa----GCGGUAC- -5'
11444 3' -58.2 NC_003085.1 + 26096 0.67 0.441232
Target:  5'- gGGU-CGaAGUGCUGGGGCUgCGCCu-- -3'
miRNA:   3'- gUCAuGC-UCGCGGCCCUGA-GCGGuac -5'
11444 3' -58.2 NC_003085.1 + 42726 0.68 0.422232
Target:  5'- uCAGgcgUGGGCGUCGGGGCgaugcgggCGCgGUGg -3'
miRNA:   3'- -GUCau-GCUCGCGGCCCUGa-------GCGgUAC- -5'
11444 3' -58.2 NC_003085.1 + 20927 0.69 0.376964
Target:  5'- gUAGgcgACGA-CGCCGcGGAUUCGCCcUGa -3'
miRNA:   3'- -GUCa--UGCUcGCGGC-CCUGAGCGGuAC- -5'
11444 3' -58.2 NC_003085.1 + 31157 0.69 0.376964
Target:  5'- uCGG-ACGgccAGCGCCGGGGCgugcacCGCCcgGu -3'
miRNA:   3'- -GUCaUGC---UCGCGGCCCUGa-----GCGGuaC- -5'
11444 3' -58.2 NC_003085.1 + 42677 0.69 0.368311
Target:  5'- -cGUGCGGGC-CCGGuACUCGUCAa- -3'
miRNA:   3'- guCAUGCUCGcGGCCcUGAGCGGUac -5'
11444 3' -58.2 NC_003085.1 + 45381 0.69 0.359795
Target:  5'- gAGUGCGGGCGCUccaccaGGaGGCggagCGCCGUc -3'
miRNA:   3'- gUCAUGCUCGCGG------CC-CUGa---GCGGUAc -5'
11444 3' -58.2 NC_003085.1 + 45772 0.69 0.335082
Target:  5'- cCGG-ACGcGGCGUCaGGACUCGCCGc- -3'
miRNA:   3'- -GUCaUGC-UCGCGGcCCUGAGCGGUac -5'
11444 3' -58.2 NC_003085.1 + 10760 0.7 0.319308
Target:  5'- ---cACGGGCGCCGGGAagaCGCUggGg -3'
miRNA:   3'- gucaUGCUCGCGGCCCUga-GCGGuaC- -5'
11444 3' -58.2 NC_003085.1 + 4113 0.7 0.319308
Target:  5'- gAGUugGGcgccGCGCUGGGACUccagCGCCGc- -3'
miRNA:   3'- gUCAugCU----CGCGGCCCUGA----GCGGUac -5'
11444 3' -58.2 NC_003085.1 + 14075 0.71 0.275363
Target:  5'- --cUGCGAGCGCCucGGACUcCGCCGg- -3'
miRNA:   3'- gucAUGCUCGCGGc-CCUGA-GCGGUac -5'
11444 3' -58.2 NC_003085.1 + 12018 0.72 0.23639
Target:  5'- gCGGUgGCGGGCGCgGGGuuggcGCUCGCUAg- -3'
miRNA:   3'- -GUCA-UGCUCGCGgCCC-----UGAGCGGUac -5'
11444 3' -58.2 NC_003085.1 + 11545 0.78 0.096606
Target:  5'- -cGU-CGAGCGCCGGGGCcaugCGCCAa- -3'
miRNA:   3'- guCAuGCUCGCGGCCCUGa---GCGGUac -5'
11444 3' -58.2 NC_003085.1 + 32009 1.08 0.000494
Target:  5'- cCAGUACGAGCGCCGGGACUCGCCAUGg -3'
miRNA:   3'- -GUCAUGCUCGCGGCCCUGAGCGGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.