miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11444 5' -60.2 NC_003085.1 + 1792 0.66 0.393833
Target:  5'- -aCAGGUGGCcCGUUggCUGGCCgGGa- -3'
miRNA:   3'- uaGUCCGCCGuGUAG--GACCGGaCCag -5'
11444 5' -60.2 NC_003085.1 + 25157 0.66 0.376011
Target:  5'- gGUguGGcCGGCGa--CCgUGGCCUGGUg -3'
miRNA:   3'- -UAguCC-GCCGUguaGG-ACCGGACCAg -5'
11444 5' -60.2 NC_003085.1 + 44442 0.66 0.376011
Target:  5'- cUCGGGCGuCGuCGUCUUcucGGCCUGcGUCg -3'
miRNA:   3'- uAGUCCGCcGU-GUAGGA---CCGGAC-CAG- -5'
11444 5' -60.2 NC_003085.1 + 21877 0.66 0.367307
Target:  5'- --aAGGUGGC-CGaaCUGGCCgGGUCc -3'
miRNA:   3'- uagUCCGCCGuGUagGACCGGaCCAG- -5'
11444 5' -60.2 NC_003085.1 + 18296 0.66 0.367307
Target:  5'- -cCGGGCGGUGCAcgCCccGGCgCUGGcCg -3'
miRNA:   3'- uaGUCCGCCGUGUa-GGa-CCG-GACCaG- -5'
11444 5' -60.2 NC_003085.1 + 36452 0.66 0.367307
Target:  5'- --aGGGCGGCGCcUCaUGGCgaGGUa -3'
miRNA:   3'- uagUCCGCCGUGuAGgACCGgaCCAg -5'
11444 5' -60.2 NC_003085.1 + 19893 0.67 0.342035
Target:  5'- cAUgAGGCcGCcgaagACGUCCgcguUGGCCUGGUUg -3'
miRNA:   3'- -UAgUCCGcCG-----UGUAGG----ACCGGACCAG- -5'
11444 5' -60.2 NC_003085.1 + 43541 0.67 0.311096
Target:  5'- --aAGGCGGCGCGUCCagcuugcgcgagauaGGCCcGcGUCa -3'
miRNA:   3'- uagUCCGCCGUGUAGGa--------------CCGGaC-CAG- -5'
11444 5' -60.2 NC_003085.1 + 30051 0.68 0.273916
Target:  5'- -cCAGGUGGCGCcgCCcugGGCCUugcuggGGUa -3'
miRNA:   3'- uaGUCCGCCGUGuaGGa--CCGGA------CCAg -5'
11444 5' -60.2 NC_003085.1 + 20617 0.68 0.260337
Target:  5'- aGUCGGGCGGCGCGggugcuugcuUCCccaUGGCCUa--- -3'
miRNA:   3'- -UAGUCCGCCGUGU----------AGG---ACCGGAccag -5'
11444 5' -60.2 NC_003085.1 + 48656 0.69 0.222885
Target:  5'- ---cGGCGGCACgcggacGUCCaccgUGGCCUGGg- -3'
miRNA:   3'- uaguCCGCCGUG------UAGG----ACCGGACCag -5'
11444 5' -60.2 NC_003085.1 + 18122 0.7 0.217107
Target:  5'- -gCGGGCGGgACggCC-GGCCUGGg- -3'
miRNA:   3'- uaGUCCGCCgUGuaGGaCCGGACCag -5'
11444 5' -60.2 NC_003085.1 + 32045 1.06 0.000357
Target:  5'- aAUCAGGCGGCACAUCCUGGCCUGGUCc -3'
miRNA:   3'- -UAGUCCGCCGUGUAGGACCGGACCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.