miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11446 5' -53.9 NC_003085.1 + 46194 0.66 0.786109
Target:  5'- aUCGUAGGCuccauGCCcgcUCAuGGcGGGCGAGUg -3'
miRNA:   3'- -AGCAUCUGc----CGG---AGUuCC-UUCGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 49039 0.73 0.376139
Target:  5'- cUCGUAGacGCGGCCgagacuggcgUCcAGGGAGCGcaGGCg -3'
miRNA:   3'- -AGCAUC--UGCCGG----------AGuUCCUUCGC--UCG- -5'
11446 5' -53.9 NC_003085.1 + 9437 0.79 0.154659
Target:  5'- aCGUAGucCGGCC-CGuacGGGAAGCGGGCc -3'
miRNA:   3'- aGCAUCu-GCCGGaGU---UCCUUCGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 31429 1.12 0.000826
Target:  5'- gUCGUAGACGGCCUCAAGGAAGCGAGCc -3'
miRNA:   3'- -AGCAUCUGCCGGAGUUCCUUCGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 4391 0.66 0.77295
Target:  5'- gUUGUGGACGgcggauaccggacaGCCggcgGAGGAGGCuGGCg -3'
miRNA:   3'- -AGCAUCUGC--------------CGGag--UUCCUUCGcUCG- -5'
11446 5' -53.9 NC_003085.1 + 32395 0.66 0.76782
Target:  5'- gUGUGGGCGGCCguacuucUCGAcgcccucgaagcuccGGAGguuggcgucauacGCGAGCa -3'
miRNA:   3'- aGCAUCUGCCGG-------AGUU---------------CCUU-------------CGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 47149 0.66 0.765758
Target:  5'- ----cGGCGGCCgguggCGAGGcAGGCcAGCg -3'
miRNA:   3'- agcauCUGCCGGa----GUUCC-UUCGcUCG- -5'
11446 5' -53.9 NC_003085.1 + 30108 0.66 0.755364
Target:  5'- gUCGaGGAUGGCCUUAGGcaccuGcCGGGCc -3'
miRNA:   3'- -AGCaUCUGCCGGAGUUCcuu--C-GCUCG- -5'
11446 5' -53.9 NC_003085.1 + 31158 0.66 0.744841
Target:  5'- ---cGGACGGCCagCGccGggGCGuGCa -3'
miRNA:   3'- agcaUCUGCCGGa-GUucCuuCGCuCG- -5'
11446 5' -53.9 NC_003085.1 + 1016 0.7 0.503532
Target:  5'- -gGUGGccuaugcucGCGGCCUCGccguccaugcggAGGAAGCcAGCg -3'
miRNA:   3'- agCAUC---------UGCCGGAGU------------UCCUUCGcUCG- -5'
11446 5' -53.9 NC_003085.1 + 43756 0.67 0.723453
Target:  5'- -aGUAGACGGCCgagucccgccaUCGAGGGucAGCa--- -3'
miRNA:   3'- agCAUCUGCCGG-----------AGUUCCU--UCGcucg -5'
11446 5' -53.9 NC_003085.1 + 35033 0.66 0.744841
Target:  5'- cCGUAGAgGGCCagcccUCGcGGAgcaucuccaaGGCGAuGCg -3'
miRNA:   3'- aGCAUCUgCCGG-----AGUuCCU----------UCGCU-CG- -5'
11446 5' -53.9 NC_003085.1 + 10169 0.66 0.786109
Target:  5'- gUCGUAGuugGCGagacaccgcagcGCCguaGAGGAGGCGcGCa -3'
miRNA:   3'- -AGCAUC---UGC------------CGGag-UUCCUUCGCuCG- -5'
11446 5' -53.9 NC_003085.1 + 35405 0.67 0.701692
Target:  5'- cUCGcAGAUGGCCUCGAcGGAcacgccgucGCGcAGUa -3'
miRNA:   3'- -AGCaUCUGCCGGAGUU-CCUu--------CGC-UCG- -5'
11446 5' -53.9 NC_003085.1 + 29396 0.66 0.77601
Target:  5'- gCGUGGaaGCGGaugucccgcuCCagGAGGgcGCGGGCg -3'
miRNA:   3'- aGCAUC--UGCC----------GGagUUCCuuCGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 19345 0.66 0.755364
Target:  5'- gCGgcGGAUGGCgUCcguguaGAGGAGGCGgccGGCg -3'
miRNA:   3'- aGCa-UCUGCCGgAG------UUCCUUCGC---UCG- -5'
11446 5' -53.9 NC_003085.1 + 25575 0.68 0.672998
Target:  5'- gCGUGGACGGCugcugccguucgCUCAcgccccgacgcgaauGGGGgcucaggaAGCGAGUg -3'
miRNA:   3'- aGCAUCUGCCG------------GAGU---------------UCCU--------UCGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 4699 0.78 0.187641
Target:  5'- cUCGUcGGCGGacuaCCUCAccGAAGCGAGCg -3'
miRNA:   3'- -AGCAuCUGCC----GGAGUucCUUCGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 28605 0.66 0.77601
Target:  5'- -gGUGGGCGGCaccgCAGc--GGCGAGCu -3'
miRNA:   3'- agCAUCUGCCGga--GUUccuUCGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 21808 0.66 0.765758
Target:  5'- cCGUAGucgguggcgauGCGGCgUCccgcuGGcGGCGAGCc -3'
miRNA:   3'- aGCAUC-----------UGCCGgAGuu---CCuUCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.