miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11448 3' -53.1 NC_003085.1 + 30617 1.09 0.001518
Target:  5'- gCCGAACACGAACUUCAGCGCGGCGUAg -3'
miRNA:   3'- -GGCUUGUGCUUGAAGUCGCGCCGCAU- -5'
11448 3' -53.1 NC_003085.1 + 38723 0.8 0.144995
Target:  5'- aCCGGugGCaGAACgucgUCAGCGCGGCuGUAg -3'
miRNA:   3'- -GGCUugUG-CUUGa---AGUCGCGCCG-CAU- -5'
11448 3' -53.1 NC_003085.1 + 36355 0.78 0.202187
Target:  5'- cCCGcgcuCACGcACcUCAGCGCGGCGUGc -3'
miRNA:   3'- -GGCuu--GUGCuUGaAGUCGCGCCGCAU- -5'
11448 3' -53.1 NC_003085.1 + 48681 0.78 0.207749
Target:  5'- aCGAACAUGGGCgcaccguuGCGCGGCGUGg -3'
miRNA:   3'- gGCUUGUGCUUGaagu----CGCGCCGCAU- -5'
11448 3' -53.1 NC_003085.1 + 1561 0.74 0.37479
Target:  5'- gCCGuGCGCGucgcCUgcaguugCGGCGCGGCGUAc -3'
miRNA:   3'- -GGCuUGUGCuu--GAa------GUCGCGCCGCAU- -5'
11448 3' -53.1 NC_003085.1 + 25050 0.73 0.402303
Target:  5'- -aGGACcCGGugUUCGGCGCGGCc-- -3'
miRNA:   3'- ggCUUGuGCUugAAGUCGCGCCGcau -5'
11448 3' -53.1 NC_003085.1 + 18098 0.73 0.402303
Target:  5'- gCCGGGguCGAGCUucuugUCGGCGCgGGCGg- -3'
miRNA:   3'- -GGCUUguGCUUGA-----AGUCGCG-CCGCau -5'
11448 3' -53.1 NC_003085.1 + 23552 0.71 0.491985
Target:  5'- uCCaGGGCGCu-GC-UCGGCGCGGCGUu -3'
miRNA:   3'- -GG-CUUGUGcuUGaAGUCGCGCCGCAu -5'
11448 3' -53.1 NC_003085.1 + 26708 0.71 0.523905
Target:  5'- cUCGAGCGCGcgcagGGCggugaCGGCGCGGCGc- -3'
miRNA:   3'- -GGCUUGUGC-----UUGaa---GUCGCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 48362 0.7 0.555485
Target:  5'- uCCGAgugacucACGCGcGCUccUgAGCGCGGCGa- -3'
miRNA:   3'- -GGCU-------UGUGCuUGA--AgUCGCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 3660 0.7 0.556585
Target:  5'- aCUGGugGCGAGgUUggaggcagggaCGGCGCGGCGa- -3'
miRNA:   3'- -GGCUugUGCUUgAA-----------GUCGCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 10135 0.69 0.612186
Target:  5'- gCGGACuaccGCGAACU---GCGCGGCGg- -3'
miRNA:   3'- gGCUUG----UGCUUGAaguCGCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 11588 0.69 0.623397
Target:  5'- gCCuGGCugGAACggggCAGgGCGGCGc- -3'
miRNA:   3'- -GGcUUGugCUUGaa--GUCgCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 47864 0.69 0.623397
Target:  5'- gUGAGguCGAGCgagacgUCAGCGCGuGCGg- -3'
miRNA:   3'- gGCUUguGCUUGa-----AGUCGCGC-CGCau -5'
11448 3' -53.1 NC_003085.1 + 22569 0.69 0.634617
Target:  5'- gCCGAugacuuCACGGGCgugUgGGcCGCGGCGg- -3'
miRNA:   3'- -GGCUu-----GUGCUUGa--AgUC-GCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 25242 0.69 0.650319
Target:  5'- gCUGAugACGAcgggcaccgcguacuGCUUCAGCGCguacucGGCGc- -3'
miRNA:   3'- -GGCUugUGCU---------------UGAAGUCGCG------CCGCau -5'
11448 3' -53.1 NC_003085.1 + 22934 0.68 0.668219
Target:  5'- uCCGAGgcCGCGu-CgaCGGCGCGGCGa- -3'
miRNA:   3'- -GGCUU--GUGCuuGaaGUCGCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 24546 0.68 0.679364
Target:  5'- uCCGucuGCGCGAGCgcuguuacUCGGCGaugaGGCGg- -3'
miRNA:   3'- -GGCu--UGUGCUUGa-------AGUCGCg---CCGCau -5'
11448 3' -53.1 NC_003085.1 + 6636 0.68 0.679364
Target:  5'- gCCGGACGUGAGCgcaaGGUGCuGGCGUc -3'
miRNA:   3'- -GGCUUGUGCUUGaag-UCGCG-CCGCAu -5'
11448 3' -53.1 NC_003085.1 + 553 0.68 0.701503
Target:  5'- gCGAacgGCGCGAGg--CGGCGCGGCu-- -3'
miRNA:   3'- gGCU---UGUGCUUgaaGUCGCGCCGcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.