miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11448 3' -53.1 NC_003085.1 + 553 0.68 0.701503
Target:  5'- gCGAacgGCGCGAGg--CGGCGCGGCu-- -3'
miRNA:   3'- gGCU---UGUGCUUgaaGUCGCGCCGcau -5'
11448 3' -53.1 NC_003085.1 + 1561 0.74 0.37479
Target:  5'- gCCGuGCGCGucgcCUgcaguugCGGCGCGGCGUAc -3'
miRNA:   3'- -GGCuUGUGCuu--GAa------GUCGCGCCGCAU- -5'
11448 3' -53.1 NC_003085.1 + 2010 0.67 0.776143
Target:  5'- aCCGA--GCGGAUg-CGGCGUGGCGc- -3'
miRNA:   3'- -GGCUugUGCUUGaaGUCGCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 3660 0.7 0.556585
Target:  5'- aCUGGugGCGAGgUUggaggcagggaCGGCGCGGCGa- -3'
miRNA:   3'- -GGCUugUGCUUgAA-----------GUCGCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 4122 0.66 0.786283
Target:  5'- gCCGcGCugGGACUcCAGCGCcGCu-- -3'
miRNA:   3'- -GGCuUGugCUUGAaGUCGCGcCGcau -5'
11448 3' -53.1 NC_003085.1 + 5176 0.67 0.734154
Target:  5'- uCCuGGCGCGGAaggCAGgGCGGCGc- -3'
miRNA:   3'- -GGcUUGUGCUUgaaGUCgCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 5216 0.66 0.796257
Target:  5'- uCCGAGCGCGAcg--CGGCcCGGCa-- -3'
miRNA:   3'- -GGCUUGUGCUugaaGUCGcGCCGcau -5'
11448 3' -53.1 NC_003085.1 + 6636 0.68 0.679364
Target:  5'- gCCGGACGUGAGCgcaaGGUGCuGGCGUc -3'
miRNA:   3'- -GGCUUGUGCUUGaag-UCGCG-CCGCAu -5'
11448 3' -53.1 NC_003085.1 + 9500 0.67 0.734154
Target:  5'- gCGGugACGAugGCggC-GCGCGGCGg- -3'
miRNA:   3'- gGCUugUGCU--UGaaGuCGCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 10135 0.69 0.612186
Target:  5'- gCGGACuaccGCGAACU---GCGCGGCGg- -3'
miRNA:   3'- gGCUUG----UGCUUGAaguCGCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 11588 0.69 0.623397
Target:  5'- gCCuGGCugGAACggggCAGgGCGGCGc- -3'
miRNA:   3'- -GGcUUGugCUUGaa--GUCgCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 14770 0.66 0.825063
Target:  5'- cUCGcACACGAgGCcaaaCGGCGCGGgGUGc -3'
miRNA:   3'- -GGCuUGUGCU-UGaa--GUCGCGCCgCAU- -5'
11448 3' -53.1 NC_003085.1 + 15832 0.67 0.734154
Target:  5'- gUGGAUGCGGuGCUUCGGUGCaaGGCGa- -3'
miRNA:   3'- gGCUUGUGCU-UGAAGUCGCG--CCGCau -5'
11448 3' -53.1 NC_003085.1 + 16720 0.66 0.803133
Target:  5'- gCGAGCACucuGCUcugcgauggcauccUCGGUGUGGCGa- -3'
miRNA:   3'- gGCUUGUGcu-UGA--------------AGUCGCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 17922 0.66 0.796257
Target:  5'- aCGggUGCcuGCgccCAGCGCGGCGc- -3'
miRNA:   3'- gGCuuGUGcuUGaa-GUCGCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 18098 0.73 0.402303
Target:  5'- gCCGGGguCGAGCUucuugUCGGCGCgGGCGg- -3'
miRNA:   3'- -GGCUUguGCUUGA-----AGUCGCG-CCGCau -5'
11448 3' -53.1 NC_003085.1 + 21473 0.68 0.712473
Target:  5'- gCCG-ACAaGGGCggcCuGCGCGGCGUGg -3'
miRNA:   3'- -GGCuUGUgCUUGaa-GuCGCGCCGCAU- -5'
11448 3' -53.1 NC_003085.1 + 21590 0.66 0.786283
Target:  5'- aCGGGCAUGGccgACaUCAuGCGUGGCGc- -3'
miRNA:   3'- gGCUUGUGCU---UGaAGU-CGCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 22569 0.69 0.634617
Target:  5'- gCCGAugacuuCACGGGCgugUgGGcCGCGGCGg- -3'
miRNA:   3'- -GGCUu-----GUGCUUGa--AgUC-GCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 22934 0.68 0.668219
Target:  5'- uCCGAGgcCGCGu-CgaCGGCGCGGCGa- -3'
miRNA:   3'- -GGCUU--GUGCuuGaaGUCGCGCCGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.