Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11451 | 3' | -55.7 | NC_003085.1 | + | 28670 | 1.1 | 0.000573 |
Target: 5'- cAACCUCCUCCCACUCCACCUCAUAGCg -3' miRNA: 3'- -UUGGAGGAGGGUGAGGUGGAGUAUCG- -5' |
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11451 | 3' | -55.7 | NC_003085.1 | + | 42527 | 0.79 | 0.096272 |
Target: 5'- cACCUgcguggCCUCCCGCUUCGCCUCGgccAGCg -3' miRNA: 3'- uUGGA------GGAGGGUGAGGUGGAGUa--UCG- -5' |
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11451 | 3' | -55.7 | NC_003085.1 | + | 17942 | 0.78 | 0.128237 |
Target: 5'- uGCCgUCUUCCCACUCCACgUCccUGGCg -3' miRNA: 3'- uUGG-AGGAGGGUGAGGUGgAGu-AUCG- -5' |
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11451 | 3' | -55.7 | NC_003085.1 | + | 5839 | 0.76 | 0.174535 |
Target: 5'- uGGCCUCCcgugCCCGCUCUGCaCUCGggaUGGCa -3' miRNA: 3'- -UUGGAGGa---GGGUGAGGUG-GAGU---AUCG- -5' |
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11451 | 3' | -55.7 | NC_003085.1 | + | 21686 | 0.72 | 0.280873 |
Target: 5'- cGCCUCCaggacgagguggCCCGCUUCGCCUCGgacauccAGCg -3' miRNA: 3'- uUGGAGGa-----------GGGUGAGGUGGAGUa------UCG- -5' |
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11451 | 3' | -55.7 | NC_003085.1 | + | 49240 | 0.69 | 0.426804 |
Target: 5'- cGCCUCUuccacugCCCGCUCCgucucuuccuGCgUCAUGGCc -3' miRNA: 3'- uUGGAGGa------GGGUGAGG----------UGgAGUAUCG- -5' |
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11451 | 3' | -55.7 | NC_003085.1 | + | 38180 | 0.69 | 0.446479 |
Target: 5'- cGCUUCCgaagccgggCCCACUCUGCCUUcgAGg -3' miRNA: 3'- uUGGAGGa--------GGGUGAGGUGGAGuaUCg -5' |
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11451 | 3' | -55.7 | NC_003085.1 | + | 14517 | 0.68 | 0.497756 |
Target: 5'- cGCCUCCgccggCCagcaACUCCGCCgCGUGcGCc -3' miRNA: 3'- uUGGAGGa----GGg---UGAGGUGGaGUAU-CG- -5' |
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11451 | 3' | -55.7 | NC_003085.1 | + | 43167 | 0.68 | 0.508332 |
Target: 5'- cGGCCUgCUCCaguCGCUCCACCgccgCGcGGUa -3' miRNA: 3'- -UUGGAgGAGG---GUGAGGUGGa---GUaUCG- -5' |
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11451 | 3' | -55.7 | NC_003085.1 | + | 16605 | 0.68 | 0.528679 |
Target: 5'- gGGCCUCCcgggcggUCCCGCggcgcgCgGCCUCucgGGCc -3' miRNA: 3'- -UUGGAGG-------AGGGUGa-----GgUGGAGua-UCG- -5' |
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11451 | 3' | -55.7 | NC_003085.1 | + | 48225 | 0.68 | 0.529758 |
Target: 5'- uGCCUCCgcagCCC-CUCCAacuCCUCcagcAGCg -3' miRNA: 3'- uUGGAGGa---GGGuGAGGU---GGAGua--UCG- -5' |
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11451 | 3' | -55.7 | NC_003085.1 | + | 42639 | 0.67 | 0.540596 |
Target: 5'- -cCCUCgUCgUCGCgCCACCUcCAUAGCc -3' miRNA: 3'- uuGGAGgAG-GGUGaGGUGGA-GUAUCG- -5' |
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11451 | 3' | -55.7 | NC_003085.1 | + | 45274 | 0.67 | 0.540596 |
Target: 5'- cGGCgUCCUgcgUCUGCUCCACCUCAa--- -3' miRNA: 3'- -UUGgAGGA---GGGUGAGGUGGAGUaucg -5' |
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11451 | 3' | -55.7 | NC_003085.1 | + | 44118 | 0.67 | 0.551507 |
Target: 5'- uGCCUCUUCCgCcuuugcugACUUCGCCUCcagcGUGGCc -3' miRNA: 3'- uUGGAGGAGG-G--------UGAGGUGGAG----UAUCG- -5' |
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11451 | 3' | -55.7 | NC_003085.1 | + | 29752 | 0.67 | 0.562484 |
Target: 5'- uGGCCgCCgUCgCGCcCCACCUCGUGcGCa -3' miRNA: 3'- -UUGGaGG-AGgGUGaGGUGGAGUAU-CG- -5' |
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11451 | 3' | -55.7 | NC_003085.1 | + | 14449 | 0.67 | 0.562484 |
Target: 5'- gGGCUUCUUCCUugcCUCCagaGCCUCGgccAGCa -3' miRNA: 3'- -UUGGAGGAGGGu--GAGG---UGGAGUa--UCG- -5' |
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11451 | 3' | -55.7 | NC_003085.1 | + | 49413 | 0.67 | 0.562484 |
Target: 5'- cACgUCUUCCCucuCUCUcagcGCCUgCGUAGCg -3' miRNA: 3'- uUGgAGGAGGGu--GAGG----UGGA-GUAUCG- -5' |
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11451 | 3' | -55.7 | NC_003085.1 | + | 6910 | 0.67 | 0.562484 |
Target: 5'- cGACCgCUUCCCGCucauggUCCACCgCAUcccgGGCg -3' miRNA: 3'- -UUGGaGGAGGGUG------AGGUGGaGUA----UCG- -5' |
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11451 | 3' | -55.7 | NC_003085.1 | + | 14308 | 0.67 | 0.573519 |
Target: 5'- gAACCUCCUgCCGCUCauguugcggcaGCCggcccacaAUGGCa -3' miRNA: 3'- -UUGGAGGAgGGUGAGg----------UGGag------UAUCG- -5' |
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11451 | 3' | -55.7 | NC_003085.1 | + | 27707 | 0.67 | 0.584603 |
Target: 5'- gGGCgUCCgCCCGCugUCgCGCCUCGUugcuGGCg -3' miRNA: 3'- -UUGgAGGaGGGUG--AG-GUGGAGUA----UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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