Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11451 | 3' | -55.7 | NC_003085.1 | + | 27210 | 0.67 | 0.584603 |
|
Target: 5'- cGGCCUgCUgCCGCUCCuucgUCUCGuUGGCc -3' miRNA: 3'- -UUGGAgGAgGGUGAGGu---GGAGU-AUCG- -5' |
|||||||
| 11451 | 3' | -55.7 | NC_003085.1 | + | 5125 | 0.66 | 0.606887 |
|
Target: 5'- cGCCcUCUCCCGCgucgCCGCC-CA-GGCa -3' miRNA: 3'- uUGGaGGAGGGUGa---GGUGGaGUaUCG- -5' |
|||||||
| 11451 | 3' | -55.7 | NC_003085.1 | + | 38886 | 0.66 | 0.606887 |
|
Target: 5'- uGCCUCgugcugcgCCCGCUCCuucGCCUCuu-GCg -3' miRNA: 3'- uUGGAGga------GGGUGAGG---UGGAGuauCG- -5' |
|||||||
| 11451 | 3' | -55.7 | NC_003085.1 | + | 21716 | 0.66 | 0.62926 |
|
Target: 5'- uGGCCgugacguacgUgUCCUugUCCACCUCGccAGCa -3' miRNA: 3'- -UUGGa---------GgAGGGugAGGUGGAGUa-UCG- -5' |
|||||||
| 11451 | 3' | -55.7 | NC_003085.1 | + | 48191 | 0.66 | 0.62926 |
|
Target: 5'- -uCC-CCUCCUGCUCCAggUCGUGcGCg -3' miRNA: 3'- uuGGaGGAGGGUGAGGUggAGUAU-CG- -5' |
|||||||
| 11451 | 3' | -55.7 | NC_003085.1 | + | 47167 | 0.66 | 0.62926 |
|
Target: 5'- uGACCUCCUCCaccacgUACUCCGUCUUGacGCg -3' miRNA: 3'- -UUGGAGGAGG------GUGAGGUGGAGUauCG- -5' |
|||||||
| 11451 | 3' | -55.7 | NC_003085.1 | + | 37757 | 0.66 | 0.62926 |
|
Target: 5'- cGGCgUCCUCCUGCUcgcCCAUgaaCUgGUAGCg -3' miRNA: 3'- -UUGgAGGAGGGUGA---GGUG---GAgUAUCG- -5' |
|||||||
| 11451 | 3' | -55.7 | NC_003085.1 | + | 2313 | 0.66 | 0.640456 |
|
Target: 5'- uGGCCUgCCUCgCCACcggccgCCGCUUCAUcGGUu -3' miRNA: 3'- -UUGGA-GGAG-GGUGa-----GGUGGAGUA-UCG- -5' |
|||||||
| 11451 | 3' | -55.7 | NC_003085.1 | + | 9784 | 0.66 | 0.651644 |
|
Target: 5'- gAGCCUCCagcgCCUGCUgCugCUCAcgcGCg -3' miRNA: 3'- -UUGGAGGa---GGGUGAgGugGAGUau-CG- -5' |
|||||||
| 11451 | 3' | -55.7 | NC_003085.1 | + | 28309 | 0.66 | 0.651644 |
|
Target: 5'- -cCCUCCacguaCCAgUCCACCUUccGGCc -3' miRNA: 3'- uuGGAGGag---GGUgAGGUGGAGuaUCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home