miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11458 5' -54.1 NC_003085.1 + 23449 0.66 0.734063
Target:  5'- -cGCAGCGUCgCCAAUUCGUUGu--- -3'
miRNA:   3'- gaCGUCGUAGaGGUUGGGCGACuacu -5'
11458 5' -54.1 NC_003085.1 + 14934 0.66 0.734063
Target:  5'- -cGUGGCG-CUCCAACUCGCgGAa-- -3'
miRNA:   3'- gaCGUCGUaGAGGUUGGGCGaCUacu -5'
11458 5' -54.1 NC_003085.1 + 7924 0.66 0.723174
Target:  5'- cCUGuCGGCGUgCaCCAACUCGUUGcgGAu -3'
miRNA:   3'- -GAC-GUCGUA-GaGGUUGGGCGACuaCU- -5'
11458 5' -54.1 NC_003085.1 + 6654 0.66 0.712189
Target:  5'- gUGCuGGCGUC-CCAACUCGUggacgccucccUGAUGGc -3'
miRNA:   3'- gACG-UCGUAGaGGUUGGGCG-----------ACUACU- -5'
11458 5' -54.1 NC_003085.1 + 40590 0.66 0.708877
Target:  5'- gUGCAGCAUUgCCGACCgggcgaggggccugUGCUGAcGGc -3'
miRNA:   3'- gACGUCGUAGaGGUUGG--------------GCGACUaCU- -5'
11458 5' -54.1 NC_003085.1 + 17499 0.66 0.705557
Target:  5'- -gGgGGCAgUCgCCAGCCCGCcgaggaccuguccggUGAUGAa -3'
miRNA:   3'- gaCgUCGU-AGaGGUUGGGCG---------------ACUACU- -5'
11458 5' -54.1 NC_003085.1 + 34353 0.66 0.688865
Target:  5'- -cGCGGCG-CUCC-AUCCGCUcgucgagGGUGAg -3'
miRNA:   3'- gaCGUCGUaGAGGuUGGGCGA-------CUACU- -5'
11458 5' -54.1 NC_003085.1 + 14905 0.67 0.678784
Target:  5'- gUGCGGCGcacgCgGGCCgGCUGGUGGc -3'
miRNA:   3'- gACGUCGUaga-GgUUGGgCGACUACU- -5'
11458 5' -54.1 NC_003085.1 + 6713 0.67 0.667539
Target:  5'- cCUGCAccGCA-C-CCAugCCGCcGAUGAc -3'
miRNA:   3'- -GACGU--CGUaGaGGUugGGCGaCUACU- -5'
11458 5' -54.1 NC_003085.1 + 18472 0.67 0.667539
Target:  5'- -gGUcgAGCGUCUUCAuauACCCGaaGAUGAg -3'
miRNA:   3'- gaCG--UCGUAGAGGU---UGGGCgaCUACU- -5'
11458 5' -54.1 NC_003085.1 + 899 0.67 0.65626
Target:  5'- -aGgGGCAUCccgugCCAACCCGCUcggGAg -3'
miRNA:   3'- gaCgUCGUAGa----GGUUGGGCGAcuaCU- -5'
11458 5' -54.1 NC_003085.1 + 23158 0.68 0.599727
Target:  5'- -gGCGGCAUCUcguaguuggCCAGCCCGacCUGcGUGGc -3'
miRNA:   3'- gaCGUCGUAGA---------GGUUGGGC--GAC-UACU- -5'
11458 5' -54.1 NC_003085.1 + 22023 0.68 0.588467
Target:  5'- aUGgAGCGUCUCUGGCCUGC--GUGGc -3'
miRNA:   3'- gACgUCGUAGAGGUUGGGCGacUACU- -5'
11458 5' -54.1 NC_003085.1 + 42334 0.69 0.543906
Target:  5'- gCUGCGGUGUCaCCAGCCgGCgcGUGAc -3'
miRNA:   3'- -GACGUCGUAGaGGUUGGgCGacUACU- -5'
11458 5' -54.1 NC_003085.1 + 19001 0.7 0.500502
Target:  5'- -cGguGCAUCgUCgGGCCCGUUGGUa- -3'
miRNA:   3'- gaCguCGUAG-AGgUUGGGCGACUAcu -5'
11458 5' -54.1 NC_003085.1 + 46873 0.7 0.479375
Target:  5'- -cGCAGCGUCuUCCGugaCCGCgucGAUGGc -3'
miRNA:   3'- gaCGUCGUAG-AGGUug-GGCGa--CUACU- -5'
11458 5' -54.1 NC_003085.1 + 19134 0.71 0.418824
Target:  5'- -cGaCAGCGUCcgCCAggGCCCGCUGgGUGGc -3'
miRNA:   3'- gaC-GUCGUAGa-GGU--UGGGCGAC-UACU- -5'
11458 5' -54.1 NC_003085.1 + 29004 0.71 0.399693
Target:  5'- aUGCAGaCGUcCUUCAacgGCCCGCUGggGGa -3'
miRNA:   3'- gACGUC-GUA-GAGGU---UGGGCGACuaCU- -5'
11458 5' -54.1 NC_003085.1 + 46262 0.73 0.345768
Target:  5'- uUGCGGCAUCgggCCAggGCCCGC-GAgagGAc -3'
miRNA:   3'- gACGUCGUAGa--GGU--UGGGCGaCUa--CU- -5'
11458 5' -54.1 NC_003085.1 + 25223 1.09 0.001052
Target:  5'- uCUGCAGCAUCUCCAACCCGCUGAUGAc -3'
miRNA:   3'- -GACGUCGUAGAGGUUGGGCGACUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.