miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11462 3' -54.2 NC_003085.1 + 22939 0.66 0.793823
Target:  5'- gGCcGCGUCgacGGCG-CGGcGAAGCCg -3'
miRNA:   3'- gCGcUGUAGac-CUGCuGCCaCUUCGG- -5'
11462 3' -54.2 NC_003085.1 + 42729 0.66 0.793823
Target:  5'- gGCGuggGCGUCgGGGCGaugcgggcGCGGUGGAcggcauccaucGCCg -3'
miRNA:   3'- gCGC---UGUAGaCCUGC--------UGCCACUU-----------CGG- -5'
11462 3' -54.2 NC_003085.1 + 40697 0.66 0.792845
Target:  5'- gGaCGACGUCcgggugcUGGACGcgcCGGUGGAccucucGCCg -3'
miRNA:   3'- gC-GCUGUAG-------ACCUGCu--GCCACUU------CGG- -5'
11462 3' -54.2 NC_003085.1 + 5964 0.66 0.783972
Target:  5'- aCGCcgGGCugCUGGA-GGCGGUG-GGCCg -3'
miRNA:   3'- -GCG--CUGuaGACCUgCUGCCACuUCGG- -5'
11462 3' -54.2 NC_003085.1 + 24694 0.66 0.783972
Target:  5'- gGaCGugGUgCUGGACGGCGGcaucgGcGGCUu -3'
miRNA:   3'- gC-GCugUA-GACCUGCUGCCa----CuUCGG- -5'
11462 3' -54.2 NC_003085.1 + 5047 0.66 0.783972
Target:  5'- gGUGGCG-CUGGAUguugaGAUGGUGcGGCg -3'
miRNA:   3'- gCGCUGUaGACCUG-----CUGCCACuUCGg -5'
11462 3' -54.2 NC_003085.1 + 22262 0.66 0.773962
Target:  5'- aGCGGCAgcaggCcgagUGGaACGuGCGG-GAGGCCg -3'
miRNA:   3'- gCGCUGUa----G----ACC-UGC-UGCCaCUUCGG- -5'
11462 3' -54.2 NC_003085.1 + 16084 0.66 0.773962
Target:  5'- uGCGACAguggCUGaGCGcGCGGUGucugucccGCCa -3'
miRNA:   3'- gCGCUGUa---GACcUGC-UGCCACuu------CGG- -5'
11462 3' -54.2 NC_003085.1 + 28006 0.66 0.771942
Target:  5'- aCGCGucuGCGUCaacgacggcuacgUGGACGGCGuccuccuGUcGGAGCCg -3'
miRNA:   3'- -GCGC---UGUAG-------------ACCUGCUGC-------CA-CUUCGG- -5'
11462 3' -54.2 NC_003085.1 + 17939 0.66 0.763805
Target:  5'- gCGCGGCGcUCUGGGCucUGcUGggGCa -3'
miRNA:   3'- -GCGCUGU-AGACCUGcuGCcACuuCGg -5'
11462 3' -54.2 NC_003085.1 + 47975 0.66 0.763805
Target:  5'- gGcCGAgG-CUGG-CGACGGUGAcgGGCg -3'
miRNA:   3'- gC-GCUgUaGACCuGCUGCCACU--UCGg -5'
11462 3' -54.2 NC_003085.1 + 46414 0.66 0.753512
Target:  5'- uCGCaGugGUCUGG-CgGGCGaGUGGAGUa -3'
miRNA:   3'- -GCG-CugUAGACCuG-CUGC-CACUUCGg -5'
11462 3' -54.2 NC_003085.1 + 5879 0.66 0.753512
Target:  5'- uGCGACcUCUGccguGGCGccggguCGGUGAcgcgGGCCu -3'
miRNA:   3'- gCGCUGuAGAC----CUGCu-----GCCACU----UCGG- -5'
11462 3' -54.2 NC_003085.1 + 20417 0.66 0.753512
Target:  5'- gGUGGCcaacugcugCUGGACGGCGuUGGAGgCa -3'
miRNA:   3'- gCGCUGua-------GACCUGCUGCcACUUCgG- -5'
11462 3' -54.2 NC_003085.1 + 2628 0.66 0.743095
Target:  5'- aCGCuGGCGUCgcaacucGGCGGCgaGGUGAuGCCg -3'
miRNA:   3'- -GCG-CUGUAGac-----CUGCUG--CCACUuCGG- -5'
11462 3' -54.2 NC_003085.1 + 41020 0.67 0.732564
Target:  5'- aGCGACAg--GGACGGCuGcUGcuGGCCg -3'
miRNA:   3'- gCGCUGUagaCCUGCUGcC-ACu-UCGG- -5'
11462 3' -54.2 NC_003085.1 + 16290 0.67 0.732564
Target:  5'- gCGCGACuaCUGGAgcaggcgccaUGACGGgauGGCCc -3'
miRNA:   3'- -GCGCUGuaGACCU----------GCUGCCacuUCGG- -5'
11462 3' -54.2 NC_003085.1 + 39054 0.67 0.732564
Target:  5'- gCGCGuACcugcugCUGGAaGGCGGUGugaacAGCCu -3'
miRNA:   3'- -GCGC-UGua----GACCUgCUGCCACu----UCGG- -5'
11462 3' -54.2 NC_003085.1 + 1383 0.67 0.732564
Target:  5'- -cCGACGUCUgGGACGA-GGUGuaugaGAGCg -3'
miRNA:   3'- gcGCUGUAGA-CCUGCUgCCAC-----UUCGg -5'
11462 3' -54.2 NC_003085.1 + 4472 0.67 0.721933
Target:  5'- cCGCGACGaCgaGGGC-ACGGUGAcgaAGCg -3'
miRNA:   3'- -GCGCUGUaGa-CCUGcUGCCACU---UCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.