miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11462 5' -58.9 NC_003085.1 + 24106 1.13 0.000229
Target:  5'- gGCGUGCCCGUCACCGUCCGGAAGCGCg -3'
miRNA:   3'- -CGCACGGGCAGUGGCAGGCCUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 28823 0.79 0.073291
Target:  5'- cGCGaGCCaCGUCAUCGUCCGcguccgcGAAGCGCc -3'
miRNA:   3'- -CGCaCGG-GCAGUGGCAGGC-------CUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 41980 0.78 0.089301
Target:  5'- cGCGgacGCCCGUCACC-UCCagcguGAGGCGCg -3'
miRNA:   3'- -CGCa--CGGGCAGUGGcAGGc----CUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 2671 0.77 0.099733
Target:  5'- aCGUGgccaCCGUCAUCGUCgCGGAGGCGg -3'
miRNA:   3'- cGCACg---GGCAGUGGCAG-GCCUUCGCg -5'
11462 5' -58.9 NC_003085.1 + 24535 0.77 0.105371
Target:  5'- aUGUGCCUGUCuCCGUCUGcGcGAGCGCu -3'
miRNA:   3'- cGCACGGGCAGuGGCAGGC-C-UUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 2047 0.76 0.117236
Target:  5'- -aGUGCCCGUCACCauggaugccaagGcCCGGAcggugacgcgacgAGCGCa -3'
miRNA:   3'- cgCACGGGCAGUGG------------CaGGCCU-------------UCGCG- -5'
11462 5' -58.9 NC_003085.1 + 14055 0.74 0.162382
Target:  5'- gGCGUGUCCGUCgagGCCaUCUGcGAGCGCc -3'
miRNA:   3'- -CGCACGGGCAG---UGGcAGGCcUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 1485 0.74 0.17121
Target:  5'- ---cGCCCGUCACCGUcgccagccucggCCGGu-GCGCc -3'
miRNA:   3'- cgcaCGGGCAGUGGCA------------GGCCuuCGCG- -5'
11462 5' -58.9 NC_003085.1 + 38415 0.74 0.175783
Target:  5'- gGUGUaGCCCGUCACaaGUCCGGGccugucucGGCGg -3'
miRNA:   3'- -CGCA-CGGGCAGUGg-CAGGCCU--------UCGCg -5'
11462 5' -58.9 NC_003085.1 + 4429 0.73 0.205557
Target:  5'- -gGUGCCCGacggugcuccUCACCGUcgCCGucGGCGCa -3'
miRNA:   3'- cgCACGGGC----------AGUGGCA--GGCcuUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 47389 0.73 0.216413
Target:  5'- uGCGcucGUCgCGUCACCGUCCGGGccuuGGCa- -3'
miRNA:   3'- -CGCa--CGG-GCAGUGGCAGGCCU----UCGcg -5'
11462 5' -58.9 NC_003085.1 + 40434 0.72 0.233615
Target:  5'- cGCGcUGCCUGcCGCCGUCCaGcccuacguAGCGCc -3'
miRNA:   3'- -CGC-ACGGGCaGUGGCAGGcCu-------UCGCG- -5'
11462 5' -58.9 NC_003085.1 + 21595 0.72 0.239599
Target:  5'- gGC-UGCCCGggguacgucggCACCGUCaCGaGGAGUGCg -3'
miRNA:   3'- -CGcACGGGCa----------GUGGCAG-GC-CUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 46440 0.72 0.245711
Target:  5'- cGCGUGCaCCGUCugggcgUCGUCCGu--GCGCc -3'
miRNA:   3'- -CGCACG-GGCAGu-----GGCAGGCcuuCGCG- -5'
11462 5' -58.9 NC_003085.1 + 42354 0.71 0.258322
Target:  5'- cGCGUGaCCGUCuuCCGgCCGGcgaggauGGCGCu -3'
miRNA:   3'- -CGCACgGGCAGu-GGCaGGCCu------UCGCG- -5'
11462 5' -58.9 NC_003085.1 + 42690 0.71 0.258322
Target:  5'- aGCGgaaggGCUC-UCGCCGUCCGccacGGCGCg -3'
miRNA:   3'- -CGCa----CGGGcAGUGGCAGGCcu--UCGCG- -5'
11462 5' -58.9 NC_003085.1 + 12324 0.71 0.278224
Target:  5'- aGgGUGCCCGccgUCGCCGUgcCCGGcgugacGGUGCc -3'
miRNA:   3'- -CgCACGGGC---AGUGGCA--GGCCu-----UCGCG- -5'
11462 5' -58.9 NC_003085.1 + 38095 0.71 0.285124
Target:  5'- -gGUGUCCGgcgccgccacCAUCGUCuCGGAGGUGCc -3'
miRNA:   3'- cgCACGGGCa---------GUGGCAG-GCCUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 26845 0.7 0.299329
Target:  5'- cGUGUGCCCccGcCACCcUCgauucaGGAGGCGCa -3'
miRNA:   3'- -CGCACGGG--CaGUGGcAGg-----CCUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 596 0.7 0.299329
Target:  5'- aGgGUGUCuCGacuggCGCCGUCCuGGgcGCGCu -3'
miRNA:   3'- -CgCACGG-GCa----GUGGCAGG-CCuuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.