miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11462 5' -58.9 NC_003085.1 + 5525 0.68 0.432251
Target:  5'- aCGUGCUCG-CACUgGUgCGcGAAGUGCg -3'
miRNA:   3'- cGCACGGGCaGUGG-CAgGC-CUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 4088 0.69 0.36995
Target:  5'- gGUGgagcGCCCGcacUCGCCG-CUGGAguugGGCGCc -3'
miRNA:   3'- -CGCa---CGGGC---AGUGGCaGGCCU----UCGCG- -5'
11462 5' -58.9 NC_003085.1 + 7765 0.68 0.395892
Target:  5'- cCGUGUCaucaGcCAUCGUCgCGGcGAGCGCa -3'
miRNA:   3'- cGCACGGg---CaGUGGCAG-GCC-UUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 39690 0.68 0.395892
Target:  5'- gGCGcuggagGCUCGUCucuCCG-CCGuuGAGGCGCa -3'
miRNA:   3'- -CGCa-----CGGGCAGu--GGCaGGC--CUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 8865 0.68 0.404796
Target:  5'- aCGUGCaucggcauccaCGUCACCGcgUCUGGcauGCGCa -3'
miRNA:   3'- cGCACGg----------GCAGUGGC--AGGCCuu-CGCG- -5'
11462 5' -58.9 NC_003085.1 + 5785 0.68 0.404796
Target:  5'- cGCGUGCUCuaCGCCGUggccuucgUCGGAgcGGUGCg -3'
miRNA:   3'- -CGCACGGGcaGUGGCA--------GGCCU--UCGCG- -5'
11462 5' -58.9 NC_003085.1 + 49298 0.68 0.404796
Target:  5'- uGCGU-CgCGUCGgCGUCCcgGGAGGCGa -3'
miRNA:   3'- -CGCAcGgGCAGUgGCAGG--CCUUCGCg -5'
11462 5' -58.9 NC_003085.1 + 39965 0.68 0.412917
Target:  5'- cGCGcGCCgccauCGUCACCGcgacguaUCCGGAgaacgacccAGCGUc -3'
miRNA:   3'- -CGCaCGG-----GCAGUGGC-------AGGCCU---------UCGCG- -5'
11462 5' -58.9 NC_003085.1 + 37854 0.68 0.421138
Target:  5'- aGCGcUGCCUG-CGCUGgccggccagacgUCGGAGGUGCu -3'
miRNA:   3'- -CGC-ACGGGCaGUGGCa-----------GGCCUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 32854 0.69 0.337211
Target:  5'- cGCGcGCCgCGggACCGcCCGGGaggcccAGCGCa -3'
miRNA:   3'- -CGCaCGG-GCagUGGCaGGCCU------UCGCG- -5'
11462 5' -58.9 NC_003085.1 + 5373 0.7 0.320887
Target:  5'- cGCGUccgGuCCCGUCACCGUcgaggccuacgCCGccaaguggauggaGggGCGCg -3'
miRNA:   3'- -CGCA---C-GGGCAGUGGCA-----------GGC-------------CuuCGCG- -5'
11462 5' -58.9 NC_003085.1 + 43805 0.7 0.314074
Target:  5'- aGCGUGUCCGUCAUCuugucguagCCGGuguugaggucGCGCa -3'
miRNA:   3'- -CGCACGGGCAGUGGca-------GGCCuu--------CGCG- -5'
11462 5' -58.9 NC_003085.1 + 14055 0.74 0.162382
Target:  5'- gGCGUGUCCGUCgagGCCaUCUGcGAGCGCc -3'
miRNA:   3'- -CGCACGGGCAG---UGGcAGGCcUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 1485 0.74 0.17121
Target:  5'- ---cGCCCGUCACCGUcgccagccucggCCGGu-GCGCc -3'
miRNA:   3'- cgcaCGGGCAGUGGCA------------GGCCuuCGCG- -5'
11462 5' -58.9 NC_003085.1 + 4429 0.73 0.205557
Target:  5'- -gGUGCCCGacggugcuccUCACCGUcgCCGucGGCGCa -3'
miRNA:   3'- cgCACGGGC----------AGUGGCA--GGCcuUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 40434 0.72 0.233615
Target:  5'- cGCGcUGCCUGcCGCCGUCCaGcccuacguAGCGCc -3'
miRNA:   3'- -CGC-ACGGGCaGUGGCAGGcCu-------UCGCG- -5'
11462 5' -58.9 NC_003085.1 + 38095 0.71 0.285124
Target:  5'- -gGUGUCCGgcgccgccacCAUCGUCuCGGAGGUGCc -3'
miRNA:   3'- cgCACGGGCa---------GUGGCAG-GCCUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 596 0.7 0.299329
Target:  5'- aGgGUGUCuCGacuggCGCCGUCCuGGgcGCGCu -3'
miRNA:   3'- -CgCACGG-GCa----GUGGCAGG-CCuuCGCG- -5'
11462 5' -58.9 NC_003085.1 + 26845 0.7 0.299329
Target:  5'- cGUGUGCCCccGcCACCcUCgauucaGGAGGCGCa -3'
miRNA:   3'- -CGCACGGG--CaGUGGcAGg-----CCUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 47253 0.7 0.314074
Target:  5'- uUGUGCUcaggCGUCACCGUCCGccacGCGUc -3'
miRNA:   3'- cGCACGG----GCAGUGGCAGGCcuu-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.