miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11463 5' -60 NC_003085.1 + 948 0.67 0.435156
Target:  5'- cGCCcucGCCGCCgAGAAGgaGGUCGCa -3'
miRNA:   3'- cCGGc--UGGUGGgUCUUUggCCGGCGg -5'
11463 5' -60 NC_003085.1 + 27508 0.67 0.435156
Target:  5'- aGCCaacggaGCCACCCccugcauGAAGCUGGCgaUGCCg -3'
miRNA:   3'- cCGGc-----UGGUGGGu------CUUUGGCCG--GCGG- -5'
11463 5' -60 NC_003085.1 + 41762 0.67 0.435156
Target:  5'- cGcCCGGCCAgCCUGGAAgcccaGCCGGUacccuuCGCCc -3'
miRNA:   3'- cC-GGCUGGU-GGGUCUU-----UGGCCG------GCGG- -5'
11463 5' -60 NC_003085.1 + 46749 0.67 0.435156
Target:  5'- uGCCaGCCGCCC-GAAguccucGCCGGaguccaccaccuCCGCCu -3'
miRNA:   3'- cCGGcUGGUGGGuCUU------UGGCC------------GGCGG- -5'
11463 5' -60 NC_003085.1 + 25453 0.67 0.435156
Target:  5'- cGGCCGGuu-UCUGGGuggUCGGCCGCCg -3'
miRNA:   3'- -CCGGCUgguGGGUCUuu-GGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 16235 0.67 0.435156
Target:  5'- cGGCUGGCgucguCAUCCucguGCUGcGCCGCCg -3'
miRNA:   3'- -CCGGCUG-----GUGGGucuuUGGC-CGGCGG- -5'
11463 5' -60 NC_003085.1 + 25680 0.67 0.434224
Target:  5'- cGGCCGGacgaauUCGCCCAu--GCCgcuucgaGGCUGCCu -3'
miRNA:   3'- -CCGGCU------GGUGGGUcuuUGG-------CCGGCGG- -5'
11463 5' -60 NC_003085.1 + 48345 0.67 0.42589
Target:  5'- cGGCCGAUggaCAUCgGGAcgGGCUcGCUGCCg -3'
miRNA:   3'- -CCGGCUG---GUGGgUCU--UUGGcCGGCGG- -5'
11463 5' -60 NC_003085.1 + 25307 0.67 0.42589
Target:  5'- gGGCCGuCgguagcacgucaUAgCCGGAGuACCaGCCGCCg -3'
miRNA:   3'- -CCGGCuG------------GUgGGUCUU-UGGcCGGCGG- -5'
11463 5' -60 NC_003085.1 + 5541 0.67 0.423134
Target:  5'- cGGCggCGGCCAUCCGGuuggcggacaugcuGAAagacccacaucCCGGCaCGCCa -3'
miRNA:   3'- -CCG--GCUGGUGGGUC--------------UUU-----------GGCCG-GCGG- -5'
11463 5' -60 NC_003085.1 + 11280 0.67 0.416743
Target:  5'- uGCCG-CCAgCCCAGggGaacacCUGcGCCGCg -3'
miRNA:   3'- cCGGCuGGU-GGGUCuuU-----GGC-CGGCGg -5'
11463 5' -60 NC_003085.1 + 28363 0.67 0.416743
Target:  5'- -uCCGcCCuguCCCAGGgguggcagGACUGGCCGUCc -3'
miRNA:   3'- ccGGCuGGu--GGGUCU--------UUGGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 12763 0.67 0.407717
Target:  5'- cGUgGACUaugugcagucagGCCCGGAAuCCGGCgccCGCCu -3'
miRNA:   3'- cCGgCUGG------------UGGGUCUUuGGCCG---GCGG- -5'
11463 5' -60 NC_003085.1 + 48884 0.67 0.407717
Target:  5'- cGCCGcacacggagcAUUGCCCGccAGCCGcGCCGCCu -3'
miRNA:   3'- cCGGC----------UGGUGGGUcuUUGGC-CGGCGG- -5'
11463 5' -60 NC_003085.1 + 11801 0.67 0.407717
Target:  5'- uGUCGGCUGCCCcaucGCCGGgUGCCc -3'
miRNA:   3'- cCGGCUGGUGGGucuuUGGCCgGCGG- -5'
11463 5' -60 NC_003085.1 + 5208 0.67 0.405033
Target:  5'- aGGCCGaguccgagcgcgacGCgGCCCggcAGGAAgCGGCCuCCa -3'
miRNA:   3'- -CCGGC--------------UGgUGGG---UCUUUgGCCGGcGG- -5'
11463 5' -60 NC_003085.1 + 35597 0.67 0.398814
Target:  5'- --gCGGCUugCCGGgcGCgGGuuGCCg -3'
miRNA:   3'- ccgGCUGGugGGUCuuUGgCCggCGG- -5'
11463 5' -60 NC_003085.1 + 19191 0.67 0.398814
Target:  5'- cGGCauucaCGuCCGCCUggggcggcGGggGCUGGgCGCCg -3'
miRNA:   3'- -CCG-----GCuGGUGGG--------UCuuUGGCCgGCGG- -5'
11463 5' -60 NC_003085.1 + 47951 0.67 0.398814
Target:  5'- cGCCuGGCgGCCguGAGgcgcACCGGCCGa- -3'
miRNA:   3'- cCGG-CUGgUGGguCUU----UGGCCGGCgg -5'
11463 5' -60 NC_003085.1 + 19901 0.67 0.398814
Target:  5'- cGCCGAagacguccgcguUgGCCUGGuuGCUGGCCuGCCa -3'
miRNA:   3'- cCGGCU------------GgUGGGUCuuUGGCCGG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.