miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11463 5' -60 NC_003085.1 + 47460 0.66 0.472365
Target:  5'- cGCCGcauCCGCUCGGuagaaguGGACgGGCUGCUc -3'
miRNA:   3'- cCGGCu--GGUGGGUC-------UUUGgCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 6608 0.66 0.470417
Target:  5'- cGGCCGG--GCCgGGAgguggggagacgaaGACgCGcGCCGCCa -3'
miRNA:   3'- -CCGGCUggUGGgUCU--------------UUG-GC-CGGCGG- -5'
11463 5' -60 NC_003085.1 + 15433 0.66 0.463633
Target:  5'- uGCCGucACCAUCCGGAacgaGAgCGGCCa-- -3'
miRNA:   3'- cCGGC--UGGUGGGUCU----UUgGCCGGcgg -5'
11463 5' -60 NC_003085.1 + 39295 0.66 0.463633
Target:  5'- aGCCGGguCCGCCCGGuccuCgCGGuacuccCCGCCg -3'
miRNA:   3'- cCGGCU--GGUGGGUCuuu-G-GCC------GGCGG- -5'
11463 5' -60 NC_003085.1 + 22288 0.66 0.463633
Target:  5'- cGGgaGGCCGCaCAGAAgaaccucaucaGCCaGGCUGCCc -3'
miRNA:   3'- -CCggCUGGUGgGUCUU-----------UGG-CCGGCGG- -5'
11463 5' -60 NC_003085.1 + 20816 0.66 0.463633
Target:  5'- uGCCGggguggacGCCAUCCuGGAugaggcGACCGG-CGCCg -3'
miRNA:   3'- cCGGC--------UGGUGGG-UCU------UUGGCCgGCGG- -5'
11463 5' -60 NC_003085.1 + 45374 0.66 0.463633
Target:  5'- cGcCCGGcCCACCCAGAAcuuCUGGCuCGaCg -3'
miRNA:   3'- cC-GGCU-GGUGGGUCUUu--GGCCG-GCgG- -5'
11463 5' -60 NC_003085.1 + 38104 0.66 0.462668
Target:  5'- cGCCG-CCACCaucgucuCGGAGguGCCGugaggcucGCCGCCc -3'
miRNA:   3'- cCGGCuGGUGG-------GUCUU--UGGC--------CGGCGG- -5'
11463 5' -60 NC_003085.1 + 36897 0.66 0.454031
Target:  5'- cGGUCcACCGuCCCAGc--CCGGCCaGCg -3'
miRNA:   3'- -CCGGcUGGU-GGGUCuuuGGCCGG-CGg -5'
11463 5' -60 NC_003085.1 + 3610 0.66 0.454031
Target:  5'- cGGCU--CCGCCUGGAcgugcgccgcGACUGGCUgGCCg -3'
miRNA:   3'- -CCGGcuGGUGGGUCU----------UUGGCCGG-CGG- -5'
11463 5' -60 NC_003085.1 + 20017 0.66 0.454031
Target:  5'- gGGCCGcaACUcaGCCUGGAGgacggcauuGCCG-CCGCCc -3'
miRNA:   3'- -CCGGC--UGG--UGGGUCUU---------UGGCcGGCGG- -5'
11463 5' -60 NC_003085.1 + 47363 0.66 0.454031
Target:  5'- cGCCGAUgGCgCCGaGGugCGGCgGCUg -3'
miRNA:   3'- cCGGCUGgUG-GGUcUUugGCCGgCGG- -5'
11463 5' -60 NC_003085.1 + 39480 0.66 0.454031
Target:  5'- cGGCguaGGCCGuCagCGGAAGCUGGcCCGCUu -3'
miRNA:   3'- -CCGg--CUGGU-Gg-GUCUUUGGCC-GGCGG- -5'
11463 5' -60 NC_003085.1 + 47831 0.66 0.454031
Target:  5'- aGGCCauGACUACgCCuccucuGugUGGCUGCCg -3'
miRNA:   3'- -CCGG--CUGGUG-GGucu---UugGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 21590 0.66 0.454031
Target:  5'- cGGUgGGCUGCCCGGGGuacgUCGGCacCGUCa -3'
miRNA:   3'- -CCGgCUGGUGGGUCUUu---GGCCG--GCGG- -5'
11463 5' -60 NC_003085.1 + 28608 0.66 0.454031
Target:  5'- gGGCgGcACCgcagcggcgaGCUCGGc-GCCGGUCGCCu -3'
miRNA:   3'- -CCGgC-UGG----------UGGGUCuuUGGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 20332 0.66 0.454031
Target:  5'- aGGCgGACUcaaucGCCUGGuuccgcGCCGcGUCGCCg -3'
miRNA:   3'- -CCGgCUGG-----UGGGUCuu----UGGC-CGGCGG- -5'
11463 5' -60 NC_003085.1 + 1194 0.66 0.451171
Target:  5'- gGGgCGACCAuugaccaaccucacCCCGGc-GCCGcGCUGCUg -3'
miRNA:   3'- -CCgGCUGGU--------------GGGUCuuUGGC-CGGCGG- -5'
11463 5' -60 NC_003085.1 + 14221 0.66 0.444537
Target:  5'- cGGuCCGAaugCAgCCAGAcucAACCGGCCaUCg -3'
miRNA:   3'- -CC-GGCUg--GUgGGUCU---UUGGCCGGcGG- -5'
11463 5' -60 NC_003085.1 + 8972 0.66 0.444537
Target:  5'- gGGCCG-CgGCCCGcGGAcuucACCGGCC-Cg -3'
miRNA:   3'- -CCGGCuGgUGGGU-CUU----UGGCCGGcGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.