miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11463 5' -60 NC_003085.1 + 5541 0.67 0.423134
Target:  5'- cGGCggCGGCCAUCCGGuuggcggacaugcuGAAagacccacaucCCGGCaCGCCa -3'
miRNA:   3'- -CCG--GCUGGUGGGUC--------------UUU-----------GGCCG-GCGG- -5'
11463 5' -60 NC_003085.1 + 5697 0.68 0.356215
Target:  5'- uGCUGACC-CUCGauggcGGGACuCGGCCGUCu -3'
miRNA:   3'- cCGGCUGGuGGGU-----CUUUG-GCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 5965 0.66 0.493055
Target:  5'- cGCCGGgCugCUGGAGGCggugGGCCGUUu -3'
miRNA:   3'- cCGGCUgGugGGUCUUUGg---CCGGCGG- -5'
11463 5' -60 NC_003085.1 + 6399 0.68 0.340095
Target:  5'- cGGCCGugucuCCACgCAGccguuccccAGCgGGCCGCUc -3'
miRNA:   3'- -CCGGCu----GGUGgGUCu--------UUGgCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 6608 0.66 0.470417
Target:  5'- cGGCCGG--GCCgGGAgguggggagacgaaGACgCGcGCCGCCa -3'
miRNA:   3'- -CCGGCUggUGGgUCU--------------UUG-GC-CGGCGG- -5'
11463 5' -60 NC_003085.1 + 6699 0.7 0.266875
Target:  5'- cGGCuugCGGCCGCCCugc-ACCGcacccauGCCGCCg -3'
miRNA:   3'- -CCG---GCUGGUGGGucuuUGGC-------CGGCGG- -5'
11463 5' -60 NC_003085.1 + 6744 0.76 0.104171
Target:  5'- uGGuCCGACUGCCCGGccuGCCGcGCCGUg -3'
miRNA:   3'- -CC-GGCUGGUGGGUCuu-UGGC-CGGCGg -5'
11463 5' -60 NC_003085.1 + 6954 0.68 0.357035
Target:  5'- cGGUCGACUucggcagcgauGCCCucuccguugcuCCGGCCGCUu -3'
miRNA:   3'- -CCGGCUGG-----------UGGGucuuu------GGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 7384 0.69 0.324509
Target:  5'- aGGCCGACggCGCCCGcguGAACUGGCacgaGUCc -3'
miRNA:   3'- -CCGGCUG--GUGGGUc--UUUGGCCGg---CGG- -5'
11463 5' -60 NC_003085.1 + 7699 0.67 0.398814
Target:  5'- cGGCUGGgCuuCCAGGcuGGCCGGgCGUCc -3'
miRNA:   3'- -CCGGCUgGugGGUCU--UUGGCCgGCGG- -5'
11463 5' -60 NC_003085.1 + 7757 0.66 0.480196
Target:  5'- aGGCCGugaagcgugagcgaGCCGCCCAGAuugcgcuACUGGacgaguucaUgGCCa -3'
miRNA:   3'- -CCGGC--------------UGGUGGGUCUu------UGGCC---------GgCGG- -5'
11463 5' -60 NC_003085.1 + 8048 0.73 0.168505
Target:  5'- uGGCUGuuGCCGCCCgAGGcuccgacAACaCGGCCGUCa -3'
miRNA:   3'- -CCGGC--UGGUGGG-UCU-------UUG-GCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 8373 0.72 0.192517
Target:  5'- uGGCCGgaGCCAgCCGGAAuCCGGaCCGaCUc -3'
miRNA:   3'- -CCGGC--UGGUgGGUCUUuGGCC-GGC-GG- -5'
11463 5' -60 NC_003085.1 + 8427 0.68 0.356215
Target:  5'- cGCCaaGCCGCCCAGGAggacGCCaGCgaCGCCc -3'
miRNA:   3'- cCGGc-UGGUGGGUCUU----UGGcCG--GCGG- -5'
11463 5' -60 NC_003085.1 + 8477 0.74 0.144102
Target:  5'- cGCCagaaGGCCGCCgAGgcGCUGGCcCGCCa -3'
miRNA:   3'- cCGG----CUGGUGGgUCuuUGGCCG-GCGG- -5'
11463 5' -60 NC_003085.1 + 8612 0.76 0.104171
Target:  5'- cGCUGGCC-UCCAGGuuggccagcCCGGCCGCCg -3'
miRNA:   3'- cCGGCUGGuGGGUCUuu-------GGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 8653 0.69 0.309462
Target:  5'- aGGCCGGCCgggacgcgcgugGCCUugggcgccgGGguGCCGuCCGCCa -3'
miRNA:   3'- -CCGGCUGG------------UGGG---------UCuuUGGCcGGCGG- -5'
11463 5' -60 NC_003085.1 + 8972 0.66 0.444537
Target:  5'- gGGCCG-CgGCCCGcGGAcuucACCGGCC-Cg -3'
miRNA:   3'- -CCGGCuGgUGGGU-CUU----UGGCCGGcGg -5'
11463 5' -60 NC_003085.1 + 9078 0.71 0.236201
Target:  5'- uGCCGGCCAgCgCCAGAGGCgucaGcGCCGCg -3'
miRNA:   3'- cCGGCUGGU-G-GGUCUUUGg---C-CGGCGg -5'
11463 5' -60 NC_003085.1 + 9123 0.69 0.294952
Target:  5'- uGCCcACCGCCCAcuGAGGCaCGcGCCaGCCc -3'
miRNA:   3'- cCGGcUGGUGGGU--CUUUG-GC-CGG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.