miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11463 5' -60 NC_003085.1 + 301 0.71 0.248349
Target:  5'- cGCCGaguccccguccGCUGCCCccgcgaagaAGAAGCCcGCCGCCa -3'
miRNA:   3'- cCGGC-----------UGGUGGG---------UCUUUGGcCGGCGG- -5'
11463 5' -60 NC_003085.1 + 656 0.72 0.197564
Target:  5'- cGCuCGAgcaCCGCCCGGAcgucGCCGGCCaCCu -3'
miRNA:   3'- cCG-GCU---GGUGGGUCUu---UGGCCGGcGG- -5'
11463 5' -60 NC_003085.1 + 939 0.71 0.224556
Target:  5'- cGUCGGCCGCguCCGGguGCCagacaGGCCGCUg -3'
miRNA:   3'- cCGGCUGGUG--GGUCuuUGG-----CCGGCGG- -5'
11463 5' -60 NC_003085.1 + 948 0.67 0.435156
Target:  5'- cGCCcucGCCGCCgAGAAGgaGGUCGCa -3'
miRNA:   3'- cCGGc--UGGUGGgUCUUUggCCGGCGg -5'
11463 5' -60 NC_003085.1 + 1037 0.71 0.224556
Target:  5'- cGCCGuCCAUgCGGAggaAGCCaGcGCCGCCg -3'
miRNA:   3'- cCGGCuGGUGgGUCU---UUGG-C-CGGCGG- -5'
11463 5' -60 NC_003085.1 + 1194 0.66 0.451171
Target:  5'- gGGgCGACCAuugaccaaccucacCCCGGc-GCCGcGCUGCUg -3'
miRNA:   3'- -CCgGCUGGU--------------GGGUCuuUGGC-CGGCGG- -5'
11463 5' -60 NC_003085.1 + 1507 0.71 0.242212
Target:  5'- cGGCCgGugCGCCUca----CGGCCGCCa -3'
miRNA:   3'- -CCGG-CugGUGGGucuuugGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 1569 0.67 0.398814
Target:  5'- cGCUGACacuGgCCAGAGAgCaGGCCGCa -3'
miRNA:   3'- cCGGCUGg--UgGGUCUUUgG-CCGGCGg -5'
11463 5' -60 NC_003085.1 + 1662 0.7 0.280978
Target:  5'- gGGCUGGCCaAUCCAGGAuugucgugGCCGaagcacaaGUCGCCu -3'
miRNA:   3'- -CCGGCUGG-UGGGUCUU--------UGGC--------CGGCGG- -5'
11463 5' -60 NC_003085.1 + 2310 0.81 0.046469
Target:  5'- cGCUGGCCugCCucgccACCGGCCGCCg -3'
miRNA:   3'- cCGGCUGGugGGucuu-UGGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 3101 0.68 0.348088
Target:  5'- aGGCCGACgGC--GGAugAACUuGCCGCCa -3'
miRNA:   3'- -CCGGCUGgUGggUCU--UUGGcCGGCGG- -5'
11463 5' -60 NC_003085.1 + 3244 0.68 0.364474
Target:  5'- gGGCCGGCCcacacacucGCCCGccauGAGCgGGCauggaGCCu -3'
miRNA:   3'- -CCGGCUGG---------UGGGUc---UUUGgCCGg----CGG- -5'
11463 5' -60 NC_003085.1 + 3464 0.68 0.380528
Target:  5'- cGGCCGucgUCACCCuguggggAGAGGCgCGcaucuGCCGCCc -3'
miRNA:   3'- -CCGGCu--GGUGGG-------UCUUUG-GC-----CGGCGG- -5'
11463 5' -60 NC_003085.1 + 3610 0.66 0.454031
Target:  5'- cGGCU--CCGCCUGGAcgugcgccgcGACUGGCUgGCCg -3'
miRNA:   3'- -CCGGcuGGUGGGUCU----------UUGGCCGG-CGG- -5'
11463 5' -60 NC_003085.1 + 3941 0.68 0.37202
Target:  5'- cGCCGcggcgauguugucGCgGCCCGGGGAUggagccagaCGGCCGCg -3'
miRNA:   3'- cCGGC-------------UGgUGGGUCUUUG---------GCCGGCGg -5'
11463 5' -60 NC_003085.1 + 4117 0.68 0.340095
Target:  5'- aGGCUGccaGCCACCUGGggGCCGaCCucguuagcgauGCCc -3'
miRNA:   3'- -CCGGC---UGGUGGGUCuuUGGCcGG-----------CGG- -5'
11463 5' -60 NC_003085.1 + 5116 0.66 0.483149
Target:  5'- gGGaUUGGCCGCCCucuc-CCGcGUCGCCg -3'
miRNA:   3'- -CC-GGCUGGUGGGucuuuGGC-CGGCGG- -5'
11463 5' -60 NC_003085.1 + 5208 0.67 0.405033
Target:  5'- aGGCCGaguccgagcgcgacGCgGCCCggcAGGAAgCGGCCuCCa -3'
miRNA:   3'- -CCGGC--------------UGgUGGG---UCUUUgGCCGGcGG- -5'
11463 5' -60 NC_003085.1 + 5278 0.68 0.364475
Target:  5'- uGCgCGACgggaCGCCCuGGAGACCGaaGUCGCCu -3'
miRNA:   3'- cCG-GCUG----GUGGG-UCUUUGGC--CGGCGG- -5'
11463 5' -60 NC_003085.1 + 5316 0.66 0.473341
Target:  5'- cGCCGuCCugaaggcgACCgAGAAGCgcgUGGCCGCg -3'
miRNA:   3'- cCGGCuGG--------UGGgUCUUUG---GCCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.