Results 1 - 20 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11463 | 5' | -60 | NC_003085.1 | + | 39927 | 0.72 | 0.191025 |
Target: 5'- cGGCCGcgucgugcACUACCaGGGAGCCGaugacccgccgcgcGCCGCCa -3' miRNA: 3'- -CCGGC--------UGGUGGgUCUUUGGC--------------CGGCGG- -5' |
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11463 | 5' | -60 | NC_003085.1 | + | 6744 | 0.76 | 0.104171 |
Target: 5'- uGGuCCGACUGCCCGGccuGCCGcGCCGUg -3' miRNA: 3'- -CC-GGCUGGUGGGUCuu-UGGC-CGGCGg -5' |
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11463 | 5' | -60 | NC_003085.1 | + | 29735 | 0.75 | 0.11936 |
Target: 5'- cGUCG-UCGCCCAGGAcgUGGCCGCCg -3' miRNA: 3'- cCGGCuGGUGGGUCUUugGCCGGCGG- -5' |
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11463 | 5' | -60 | NC_003085.1 | + | 22076 | 0.75 | 0.125995 |
Target: 5'- aGGCCaucGCCGCCgcggaagaggcgCAGAAGCaGGCCGCCc -3' miRNA: 3'- -CCGGc--UGGUGG------------GUCUUUGgCCGGCGG- -5' |
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11463 | 5' | -60 | NC_003085.1 | + | 37021 | 0.75 | 0.131902 |
Target: 5'- cGCUGACCuucaguggcgACCCGGAcACCGGCCuguaccgcgcuggcGCCg -3' miRNA: 3'- cCGGCUGG----------UGGGUCUuUGGCCGG--------------CGG- -5' |
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11463 | 5' | -60 | NC_003085.1 | + | 31598 | 0.74 | 0.1403 |
Target: 5'- uGuuGugCAgcCCCAGGAggcACCGGCCGCg -3' miRNA: 3'- cCggCugGU--GGGUCUU---UGGCCGGCGg -5' |
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11463 | 5' | -60 | NC_003085.1 | + | 43066 | 0.74 | 0.143717 |
Target: 5'- cGGCUGcguggagacACgGCCgAGGaagaaacGACCGGCCGCCa -3' miRNA: 3'- -CCGGC---------UGgUGGgUCU-------UUGGCCGGCGG- -5' |
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11463 | 5' | -60 | NC_003085.1 | + | 8477 | 0.74 | 0.144102 |
Target: 5'- cGCCagaaGGCCGCCgAGgcGCUGGCcCGCCa -3' miRNA: 3'- cCGG----CUGGUGGgUCuuUGGCCG-GCGG- -5' |
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11463 | 5' | -60 | NC_003085.1 | + | 46677 | 0.73 | 0.168949 |
Target: 5'- cGCCG-CCGCCUGGAGcGCCGccGCUGCCu -3' miRNA: 3'- cCGGCuGGUGGGUCUU-UGGC--CGGCGG- -5' |
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11463 | 5' | -60 | NC_003085.1 | + | 31345 | 0.76 | 0.100806 |
Target: 5'- aGGCCGGCCGuCCCgcccgcgccgacaAGAAGcucgaccCCGGCCGCa -3' miRNA: 3'- -CCGGCUGGU-GGG-------------UCUUU-------GGCCGGCGg -5' |
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11463 | 5' | -60 | NC_003085.1 | + | 23219 | 0.77 | 0.093348 |
Target: 5'- uGGCCgGGCUGCuCCAGA---CGGCCGCCg -3' miRNA: 3'- -CCGG-CUGGUG-GGUCUuugGCCGGCGG- -5' |
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11463 | 5' | -60 | NC_003085.1 | + | 49168 | 0.77 | 0.090814 |
Target: 5'- aGGUCGgagGCCGCCCGGu--CCuGCCGCCg -3' miRNA: 3'- -CCGGC---UGGUGGGUCuuuGGcCGGCGG- -5' |
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11463 | 5' | -60 | NC_003085.1 | + | 2310 | 0.81 | 0.046469 |
Target: 5'- cGCUGGCCugCCucgccACCGGCCGCCg -3' miRNA: 3'- cCGGCUGGugGGucuu-UGGCCGGCGG- -5' |
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11463 | 5' | -60 | NC_003085.1 | + | 23339 | 0.8 | 0.05502 |
Target: 5'- uGGCCGGCCAagcgCC----GCCGGCCGCCg -3' miRNA: 3'- -CCGGCUGGUg---GGucuuUGGCCGGCGG- -5' |
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11463 | 5' | -60 | NC_003085.1 | + | 15177 | 0.79 | 0.061551 |
Target: 5'- cGCUGACgGCCCGGcuGAGCCGGUgCGCCa -3' miRNA: 3'- cCGGCUGgUGGGUC--UUUGGCCG-GCGG- -5' |
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11463 | 5' | -60 | NC_003085.1 | + | 18536 | 0.79 | 0.066934 |
Target: 5'- gGGCCGAUUGCCCAGAAGCacgaGGUgGCg -3' miRNA: 3'- -CCGGCUGGUGGGUCUUUGg---CCGgCGg -5' |
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11463 | 5' | -60 | NC_003085.1 | + | 35129 | 0.78 | 0.074822 |
Target: 5'- uGGCCGuGCCAUUguG-GGCCGGCUGCCg -3' miRNA: 3'- -CCGGC-UGGUGGguCuUUGGCCGGCGG- -5' |
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11463 | 5' | -60 | NC_003085.1 | + | 14898 | 0.77 | 0.088102 |
Target: 5'- cGCCG-CCAUUgAGGAguugcgcACCGGCCGCCa -3' miRNA: 3'- cCGGCuGGUGGgUCUU-------UGGCCGGCGG- -5' |
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11463 | 5' | -60 | NC_003085.1 | + | 45342 | 0.77 | 0.090814 |
Target: 5'- aGGUCGGCC-CCCAGGuGGCUGGCaGCCu -3' miRNA: 3'- -CCGGCUGGuGGGUCU-UUGGCCGgCGG- -5' |
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11463 | 5' | -60 | NC_003085.1 | + | 22800 | 0.77 | 0.090814 |
Target: 5'- cGGCCGcucCCGCCCAGGAGgcgaCGGCC-CCg -3' miRNA: 3'- -CCGGCu--GGUGGGUCUUUg---GCCGGcGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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