miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11463 5' -60 NC_003085.1 + 24009 1.14 0.000156
Target:  5'- cGGCCGACCACCCAGAAACCGGCCGCCg -3'
miRNA:   3'- -CCGGCUGGUGGGUCUUUGGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 30071 0.82 0.038231
Target:  5'- aGGCCGGCauggaggacuugcugGCUCAGAAggacGCCGGCCGCCu -3'
miRNA:   3'- -CCGGCUGg--------------UGGGUCUU----UGGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 37679 0.81 0.042693
Target:  5'- aGCCGACaCGCCCGGAGcGCgGcGCCGCCg -3'
miRNA:   3'- cCGGCUG-GUGGGUCUU-UGgC-CGGCGG- -5'
11463 5' -60 NC_003085.1 + 2310 0.81 0.046469
Target:  5'- cGCUGGCCugCCucgccACCGGCCGCCg -3'
miRNA:   3'- cCGGCUGGugGGucuu-UGGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 23339 0.8 0.05502
Target:  5'- uGGCCGGCCAagcgCC----GCCGGCCGCCg -3'
miRNA:   3'- -CCGGCUGGUg---GGucuuUGGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 15177 0.79 0.061551
Target:  5'- cGCUGACgGCCCGGcuGAGCCGGUgCGCCa -3'
miRNA:   3'- cCGGCUGgUGGGUC--UUUGGCCG-GCGG- -5'
11463 5' -60 NC_003085.1 + 18536 0.79 0.066934
Target:  5'- gGGCCGAUUGCCCAGAAGCacgaGGUgGCg -3'
miRNA:   3'- -CCGGCUGGUGGGUCUUUGg---CCGgCGg -5'
11463 5' -60 NC_003085.1 + 12265 0.79 0.066934
Target:  5'- aGGCCGcuGgCGCCguGAAACUGGCCGUCc -3'
miRNA:   3'- -CCGGC--UgGUGGguCUUUGGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 35129 0.78 0.074822
Target:  5'- uGGCCGuGCCAUUguG-GGCCGGCUGCCg -3'
miRNA:   3'- -CCGGC-UGGUGGguCuUUGGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 34485 0.77 0.08594
Target:  5'- aGGCCauguccaGCCuCCCGGAggUgGGCCGCCa -3'
miRNA:   3'- -CCGGc------UGGuGGGUCUuuGgCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 14898 0.77 0.088102
Target:  5'- cGCCG-CCAUUgAGGAguugcgcACCGGCCGCCa -3'
miRNA:   3'- cCGGCuGGUGGgUCUU-------UGGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 49168 0.77 0.090814
Target:  5'- aGGUCGgagGCCGCCCGGu--CCuGCCGCCg -3'
miRNA:   3'- -CCGGC---UGGUGGGUCuuuGGcCGGCGG- -5'
11463 5' -60 NC_003085.1 + 22800 0.77 0.090814
Target:  5'- cGGCCGcucCCGCCCAGGAGgcgaCGGCC-CCg -3'
miRNA:   3'- -CCGGCu--GGUGGGUCUUUg---GCCGGcGG- -5'
11463 5' -60 NC_003085.1 + 45342 0.77 0.090814
Target:  5'- aGGUCGGCC-CCCAGGuGGCUGGCaGCCu -3'
miRNA:   3'- -CCGGCUGGuGGGUCU-UUGGCCGgCGG- -5'
11463 5' -60 NC_003085.1 + 23219 0.77 0.093348
Target:  5'- uGGCCgGGCUGCuCCAGA---CGGCCGCCg -3'
miRNA:   3'- -CCGG-CUGGUG-GGUCUuugGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 31345 0.76 0.100806
Target:  5'- aGGCCGGCCGuCCCgcccgcgccgacaAGAAGcucgaccCCGGCCGCa -3'
miRNA:   3'- -CCGGCUGGU-GGG-------------UCUUU-------GGCCGGCGg -5'
11463 5' -60 NC_003085.1 + 6744 0.76 0.104171
Target:  5'- uGGuCCGACUGCCCGGccuGCCGcGCCGUg -3'
miRNA:   3'- -CC-GGCUGGUGGGUCuu-UGGC-CGGCGg -5'
11463 5' -60 NC_003085.1 + 8612 0.76 0.104171
Target:  5'- cGCUGGCC-UCCAGGuuggccagcCCGGCCGCCg -3'
miRNA:   3'- cCGGCUGGuGGGUCUuu-------GGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 29735 0.75 0.11936
Target:  5'- cGUCG-UCGCCCAGGAcgUGGCCGCCg -3'
miRNA:   3'- cCGGCuGGUGGGUCUUugGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 22076 0.75 0.125995
Target:  5'- aGGCCaucGCCGCCgcggaagaggcgCAGAAGCaGGCCGCCc -3'
miRNA:   3'- -CCGGc--UGGUGG------------GUCUUUGgCCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.