miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11463 5' -60 NC_003085.1 + 22288 0.66 0.463633
Target:  5'- cGGgaGGCCGCaCAGAAgaaccucaucaGCCaGGCUGCCc -3'
miRNA:   3'- -CCggCUGGUGgGUCUU-----------UGG-CCGGCGG- -5'
11463 5' -60 NC_003085.1 + 41041 0.66 0.493055
Target:  5'- uGGCCGAgCACCU-GAAACU-GCCaGCg -3'
miRNA:   3'- -CCGGCUgGUGGGuCUUUGGcCGG-CGg -5'
11463 5' -60 NC_003085.1 + 13558 0.66 0.493055
Target:  5'- cGGCUGGCCguggcaugGCCCuGGGACuCcGCgGCCc -3'
miRNA:   3'- -CCGGCUGG--------UGGGuCUUUG-GcCGgCGG- -5'
11463 5' -60 NC_003085.1 + 5316 0.66 0.473341
Target:  5'- cGCCGuCCugaaggcgACCgAGAAGCgcgUGGCCGCg -3'
miRNA:   3'- cCGGCuGG--------UGGgUCUUUG---GCCGGCGg -5'
11463 5' -60 NC_003085.1 + 9369 0.66 0.483149
Target:  5'- aGGCCGACaaggaagggCugCUuGAGuACCGGCCaGCg -3'
miRNA:   3'- -CCGGCUG---------GugGGuCUU-UGGCCGG-CGg -5'
11463 5' -60 NC_003085.1 + 20816 0.66 0.463633
Target:  5'- uGCCGggguggacGCCAUCCuGGAugaggcGACCGG-CGCCg -3'
miRNA:   3'- cCGGC--------UGGUGGG-UCU------UUGGCCgGCGG- -5'
11463 5' -60 NC_003085.1 + 33837 0.66 0.483149
Target:  5'- cGCUcuCCGCCCGGccACCGGCCcacguaGUCa -3'
miRNA:   3'- cCGGcuGGUGGGUCuuUGGCCGG------CGG- -5'
11463 5' -60 NC_003085.1 + 10196 0.66 0.473341
Target:  5'- uGCgCGACCugcucACCCGcGGGA--GGCCGCCa -3'
miRNA:   3'- cCG-GCUGG-----UGGGU-CUUUggCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 14971 0.66 0.473341
Target:  5'- cGGCCcACCuCCgGGAGGCUGGaCaugGCCu -3'
miRNA:   3'- -CCGGcUGGuGGgUCUUUGGCC-Gg--CGG- -5'
11463 5' -60 NC_003085.1 + 38104 0.66 0.462668
Target:  5'- cGCCG-CCACCaucgucuCGGAGguGCCGugaggcucGCCGCCc -3'
miRNA:   3'- cCGGCuGGUGG-------GUCUU--UGGC--------CGGCGG- -5'
11463 5' -60 NC_003085.1 + 13482 0.66 0.483149
Target:  5'- cGGCuCGACCuggACCuCGGAGACgUGGCaGCg -3'
miRNA:   3'- -CCG-GCUGG---UGG-GUCUUUG-GCCGgCGg -5'
11463 5' -60 NC_003085.1 + 20017 0.66 0.454031
Target:  5'- gGGCCGcaACUcaGCCUGGAGgacggcauuGCCG-CCGCCc -3'
miRNA:   3'- -CCGGC--UGG--UGGGUCUU---------UGGCcGGCGG- -5'
11463 5' -60 NC_003085.1 + 8972 0.66 0.444537
Target:  5'- gGGCCG-CgGCCCGcGGAcuucACCGGCC-Cg -3'
miRNA:   3'- -CCGGCuGgUGGGU-CUU----UGGCCGGcGg -5'
11463 5' -60 NC_003085.1 + 29775 0.66 0.493055
Target:  5'- cGCCGcgcGCC-UCCAGGGccGCCaggaGGUCGCCg -3'
miRNA:   3'- cCGGC---UGGuGGGUCUU--UGG----CCGGCGG- -5'
11463 5' -60 NC_003085.1 + 45374 0.66 0.463633
Target:  5'- cGcCCGGcCCACCCAGAAcuuCUGGCuCGaCg -3'
miRNA:   3'- cC-GGCU-GGUGGGUCUUu--GGCCG-GCgG- -5'
11463 5' -60 NC_003085.1 + 5965 0.66 0.493055
Target:  5'- cGCCGGgCugCUGGAGGCggugGGCCGUUu -3'
miRNA:   3'- cCGGCUgGugGGUCUUUGg---CCGGCGG- -5'
11463 5' -60 NC_003085.1 + 26762 0.66 0.473341
Target:  5'- cGGCCcuucGCCACcaaCCGGAuGCUGGacugCGCCa -3'
miRNA:   3'- -CCGGc---UGGUG---GGUCUuUGGCCg---GCGG- -5'
11463 5' -60 NC_003085.1 + 41506 0.66 0.493055
Target:  5'- cGGcCCGACUucaUCGGcuACCGGgCGCUa -3'
miRNA:   3'- -CC-GGCUGGug-GGUCuuUGGCCgGCGG- -5'
11463 5' -60 NC_003085.1 + 32822 0.66 0.482164
Target:  5'- cGGCugucgCGACUgauugggGCCCgAGAGGCCGcgcGCCGCg -3'
miRNA:   3'- -CCG-----GCUGG-------UGGG-UCUUUGGC---CGGCGg -5'
11463 5' -60 NC_003085.1 + 37162 0.66 0.483149
Target:  5'- cGCCG-CaACCCAGcggaccACCGcGCCGUCg -3'
miRNA:   3'- cCGGCuGgUGGGUCuu----UGGC-CGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.