miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11463 5' -60 NC_003085.1 + 45158 0.75 0.129439
Target:  5'- uGCCaACCugcACCCGGAGACCGGgUGCUg -3'
miRNA:   3'- cCGGcUGG---UGGGUCUUUGGCCgGCGG- -5'
11463 5' -60 NC_003085.1 + 37021 0.75 0.131902
Target:  5'- cGCUGACCuucaguggcgACCCGGAcACCGGCCuguaccgcgcuggcGCCg -3'
miRNA:   3'- cCGGCUGG----------UGGGUCUuUGGCCGG--------------CGG- -5'
11463 5' -60 NC_003085.1 + 31598 0.74 0.1403
Target:  5'- uGuuGugCAgcCCCAGGAggcACCGGCCGCg -3'
miRNA:   3'- cCggCugGU--GGGUCUU---UGGCCGGCGg -5'
11463 5' -60 NC_003085.1 + 43066 0.74 0.143717
Target:  5'- cGGCUGcguggagacACgGCCgAGGaagaaacGACCGGCCGCCa -3'
miRNA:   3'- -CCGGC---------UGgUGGgUCU-------UUGGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 25074 0.74 0.144102
Target:  5'- cGGCaCGGCCccgUCCAGGccauugauGGcCCGGCCGCCa -3'
miRNA:   3'- -CCG-GCUGGu--GGGUCU--------UU-GGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 8477 0.74 0.144102
Target:  5'- cGCCagaaGGCCGCCgAGgcGCUGGCcCGCCa -3'
miRNA:   3'- cCGG----CUGGUGGgUCuuUGGCCG-GCGG- -5'
11463 5' -60 NC_003085.1 + 27324 0.74 0.15199
Target:  5'- gGGCC-ACCACCUuuGGGuCCGGCUGCUg -3'
miRNA:   3'- -CCGGcUGGUGGGu-CUUuGGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 24570 0.74 0.15199
Target:  5'- cGGCgaugaGGCgGCCCuGGAACUGGgCGCCg -3'
miRNA:   3'- -CCGg----CUGgUGGGuCUUUGGCCgGCGG- -5'
11463 5' -60 NC_003085.1 + 24164 0.74 0.156079
Target:  5'- cGUCGuCCACCU---GGCCGGCCGUCg -3'
miRNA:   3'- cCGGCuGGUGGGucuUUGGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 42532 0.73 0.160267
Target:  5'- cGCCcaGCCGCCCGGGAugCGGUgGaCCa -3'
miRNA:   3'- cCGGc-UGGUGGGUCUUugGCCGgC-GG- -5'
11463 5' -60 NC_003085.1 + 28426 0.73 0.164557
Target:  5'- gGGaCGGaaGCCCAGAGAUugCGGCUGCCg -3'
miRNA:   3'- -CCgGCUggUGGGUCUUUG--GCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 8048 0.73 0.168505
Target:  5'- uGGCUGuuGCCGCCCgAGGcuccgacAACaCGGCCGUCa -3'
miRNA:   3'- -CCGGC--UGGUGGG-UCU-------UUG-GCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 46677 0.73 0.168949
Target:  5'- cGCCG-CCGCCUGGAGcGCCGccGCUGCCu -3'
miRNA:   3'- cCGGCuGGUGGGUCUU-UGGC--CGGCGG- -5'
11463 5' -60 NC_003085.1 + 16521 0.73 0.182762
Target:  5'- uGGCaGGCgCGCCUguuGAGCCGGUCGCCg -3'
miRNA:   3'- -CCGgCUG-GUGGGuc-UUUGGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 39927 0.72 0.191025
Target:  5'- cGGCCGcgucgugcACUACCaGGGAGCCGaugacccgccgcgcGCCGCCa -3'
miRNA:   3'- -CCGGC--------UGGUGGgUCUUUGGC--------------CGGCGG- -5'
11463 5' -60 NC_003085.1 + 8373 0.72 0.192517
Target:  5'- uGGCCGgaGCCAgCCGGAAuCCGGaCCGaCUc -3'
miRNA:   3'- -CCGGC--UGGUgGGUCUUuGGCC-GGC-GG- -5'
11463 5' -60 NC_003085.1 + 12703 0.72 0.192517
Target:  5'- cGCCGACgGC---GAGGCCGGCgGCCg -3'
miRNA:   3'- cCGGCUGgUGgguCUUUGGCCGgCGG- -5'
11463 5' -60 NC_003085.1 + 656 0.72 0.197564
Target:  5'- cGCuCGAgcaCCGCCCGGAcgucGCCGGCCaCCu -3'
miRNA:   3'- cCG-GCU---GGUGGGUCUu---UGGCCGGcGG- -5'
11463 5' -60 NC_003085.1 + 40402 0.72 0.197564
Target:  5'- gGGCCGaACCACCac---ACCuGCCGCCc -3'
miRNA:   3'- -CCGGC-UGGUGGgucuuUGGcCGGCGG- -5'
11463 5' -60 NC_003085.1 + 44237 0.72 0.201165
Target:  5'- aGGCCGcuuCCugCCGGGccgcgucgcgcucgGACuCGGCCuGCCu -3'
miRNA:   3'- -CCGGCu--GGugGGUCU--------------UUG-GCCGG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.