miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11463 5' -60 NC_003085.1 + 5965 0.66 0.493055
Target:  5'- cGCCGGgCugCUGGAGGCggugGGCCGUUu -3'
miRNA:   3'- cCGGCUgGugGGUCUUUGg---CCGGCGG- -5'
11463 5' -60 NC_003085.1 + 39480 0.66 0.454031
Target:  5'- cGGCguaGGCCGuCagCGGAAGCUGGcCCGCUu -3'
miRNA:   3'- -CCGg--CUGGU-Gg-GUCUUUGGCC-GGCGG- -5'
11463 5' -60 NC_003085.1 + 47831 0.66 0.454031
Target:  5'- aGGCCauGACUACgCCuccucuGugUGGCUGCCg -3'
miRNA:   3'- -CCGG--CUGGUG-GGucu---UugGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 24009 1.14 0.000156
Target:  5'- cGGCCGACCACCCAGAAACCGGCCGCCg -3'
miRNA:   3'- -CCGGCUGGUGGGUCUUUGGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 37162 0.66 0.483149
Target:  5'- cGCCG-CaACCCAGcggaccACCGcGCCGUCg -3'
miRNA:   3'- cCGGCuGgUGGGUCuu----UGGC-CGGCGG- -5'
11463 5' -60 NC_003085.1 + 20377 0.66 0.483149
Target:  5'- cGCCGGgCaACCCGGAGaaguccaaagGCUGGCUcaggcuggugGCCa -3'
miRNA:   3'- cCGGCUgG-UGGGUCUU----------UGGCCGG----------CGG- -5'
11463 5' -60 NC_003085.1 + 20051 0.66 0.483149
Target:  5'- aGCCu-CCGCCau-GGGCUGGCCGCg -3'
miRNA:   3'- cCGGcuGGUGGgucUUUGGCCGGCGg -5'
11463 5' -60 NC_003085.1 + 5116 0.66 0.483149
Target:  5'- gGGaUUGGCCGCCCucuc-CCGcGUCGCCg -3'
miRNA:   3'- -CC-GGCUGGUGGGucuuuGGC-CGGCGG- -5'
11463 5' -60 NC_003085.1 + 47460 0.66 0.472365
Target:  5'- cGCCGcauCCGCUCGGuagaaguGGACgGGCUGCUc -3'
miRNA:   3'- cCGGCu--GGUGGGUC-------UUUGgCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 3610 0.66 0.454031
Target:  5'- cGGCU--CCGCCUGGAcgugcgccgcGACUGGCUgGCCg -3'
miRNA:   3'- -CCGGcuGGUGGGUCU----------UUGGCCGG-CGG- -5'
11463 5' -60 NC_003085.1 + 39295 0.66 0.463633
Target:  5'- aGCCGGguCCGCCCGGuccuCgCGGuacuccCCGCCg -3'
miRNA:   3'- cCGGCU--GGUGGGUCuuu-G-GCC------GGCGG- -5'
11463 5' -60 NC_003085.1 + 31115 0.66 0.473341
Target:  5'- cGGCCuGcACCGCCCcguaAGGcAGCgcguugCGGCUGCCc -3'
miRNA:   3'- -CCGG-C-UGGUGGG----UCU-UUG------GCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 41041 0.66 0.493055
Target:  5'- uGGCCGAgCACCU-GAAACU-GCCaGCg -3'
miRNA:   3'- -CCGGCUgGUGGGuCUUUGGcCGG-CGg -5'
11463 5' -60 NC_003085.1 + 15433 0.66 0.463633
Target:  5'- uGCCGucACCAUCCGGAacgaGAgCGGCCa-- -3'
miRNA:   3'- cCGGC--UGGUGGGUCU----UUgGCCGGcgg -5'
11463 5' -60 NC_003085.1 + 13558 0.66 0.493055
Target:  5'- cGGCUGGCCguggcaugGCCCuGGGACuCcGCgGCCc -3'
miRNA:   3'- -CCGGCUGG--------UGGGuCUUUG-GcCGgCGG- -5'
11463 5' -60 NC_003085.1 + 7757 0.66 0.480196
Target:  5'- aGGCCGugaagcgugagcgaGCCGCCCAGAuugcgcuACUGGacgaguucaUgGCCa -3'
miRNA:   3'- -CCGGC--------------UGGUGGGUCUu------UGGCC---------GgCGG- -5'
11463 5' -60 NC_003085.1 + 47363 0.66 0.454031
Target:  5'- cGCCGAUgGCgCCGaGGugCGGCgGCUg -3'
miRNA:   3'- cCGGCUGgUG-GGUcUUugGCCGgCGG- -5'
11463 5' -60 NC_003085.1 + 36897 0.66 0.454031
Target:  5'- cGGUCcACCGuCCCAGc--CCGGCCaGCg -3'
miRNA:   3'- -CCGGcUGGU-GGGUCuuuGGCCGG-CGg -5'
11463 5' -60 NC_003085.1 + 29775 0.66 0.493055
Target:  5'- cGCCGcgcGCC-UCCAGGGccGCCaggaGGUCGCCg -3'
miRNA:   3'- cCGGC---UGGuGGGUCUU--UGG----CCGGCGG- -5'
11463 5' -60 NC_003085.1 + 34277 0.66 0.483149
Target:  5'- cGCUGGCgCACCgGcucAGCCGGgCCGUCa -3'
miRNA:   3'- cCGGCUG-GUGGgUcu-UUGGCC-GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.