miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11463 5' -60 NC_003085.1 + 49335 0.68 0.381386
Target:  5'- -uCCGucCCGCCCucuccccacauuGGggGCCcGCCGCCc -3'
miRNA:   3'- ccGGCu-GGUGGG------------UCuuUGGcCGGCGG- -5'
11463 5' -60 NC_003085.1 + 49168 0.77 0.090814
Target:  5'- aGGUCGgagGCCGCCCGGu--CCuGCCGCCg -3'
miRNA:   3'- -CCGGC---UGGUGGGUCuuuGGcCGGCGG- -5'
11463 5' -60 NC_003085.1 + 48899 0.72 0.210149
Target:  5'- gGGCCGcccugcacuucgacgGCCACCCcGcc-CUGGCUGCCg -3'
miRNA:   3'- -CCGGC---------------UGGUGGGuCuuuGGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 48884 0.67 0.407717
Target:  5'- cGCCGcacacggagcAUUGCCCGccAGCCGcGCCGCCu -3'
miRNA:   3'- cCGGC----------UGGUGGGUcuUUGGC-CGGCGG- -5'
11463 5' -60 NC_003085.1 + 48770 0.69 0.324509
Target:  5'- aGGCCG--CGCCC-GAGGCCGGaCGCg -3'
miRNA:   3'- -CCGGCugGUGGGuCUUUGGCCgGCGg -5'
11463 5' -60 NC_003085.1 + 48345 0.67 0.42589
Target:  5'- cGGCCGAUggaCAUCgGGAcgGGCUcGCUGCCg -3'
miRNA:   3'- -CCGGCUG---GUGGgUCU--UUGGcCGGCGG- -5'
11463 5' -60 NC_003085.1 + 47951 0.67 0.398814
Target:  5'- cGCCuGGCgGCCguGAGgcgcACCGGCCGa- -3'
miRNA:   3'- cCGG-CUGgUGGguCUU----UGGCCGGCgg -5'
11463 5' -60 NC_003085.1 + 47831 0.66 0.454031
Target:  5'- aGGCCauGACUACgCCuccucuGugUGGCUGCCg -3'
miRNA:   3'- -CCGG--CUGGUG-GGucu---UugGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 47460 0.66 0.472365
Target:  5'- cGCCGcauCCGCUCGGuagaaguGGACgGGCUGCUc -3'
miRNA:   3'- cCGGCu--GGUGGGUC-------UUUGgCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 47363 0.66 0.454031
Target:  5'- cGCCGAUgGCgCCGaGGugCGGCgGCUg -3'
miRNA:   3'- cCGGCUGgUG-GGUcUUugGCCGgCGG- -5'
11463 5' -60 NC_003085.1 + 46749 0.67 0.435156
Target:  5'- uGCCaGCCGCCC-GAAguccucGCCGGaguccaccaccuCCGCCu -3'
miRNA:   3'- cCGGcUGGUGGGuCUU------UGGCC------------GGCGG- -5'
11463 5' -60 NC_003085.1 + 46677 0.73 0.168949
Target:  5'- cGCCG-CCGCCUGGAGcGCCGccGCUGCCu -3'
miRNA:   3'- cCGGCuGGUGGGUCUU-UGGC--CGGCGG- -5'
11463 5' -60 NC_003085.1 + 46607 0.69 0.32298
Target:  5'- uGGUCGGCaugGCUCAGcccuccucgcCCGGCUGCCg -3'
miRNA:   3'- -CCGGCUGg--UGGGUCuuu-------GGCCGGCGG- -5'
11463 5' -60 NC_003085.1 + 46230 0.71 0.224556
Target:  5'- uGUgGGCCgGCCCAGGuagcGCCGGCauCGCCu -3'
miRNA:   3'- cCGgCUGG-UGGGUCUu---UGGCCG--GCGG- -5'
11463 5' -60 NC_003085.1 + 45910 0.7 0.267534
Target:  5'- cGCCGugUgcGCCCAGAgaggcAGCCaGaGUCGCCa -3'
miRNA:   3'- cCGGCugG--UGGGUCU-----UUGG-C-CGGCGG- -5'
11463 5' -60 NC_003085.1 + 45374 0.66 0.463633
Target:  5'- cGcCCGGcCCACCCAGAAcuuCUGGCuCGaCg -3'
miRNA:   3'- cC-GGCU-GGUGGGUCUUu--GGCCG-GCgG- -5'
11463 5' -60 NC_003085.1 + 45342 0.77 0.090814
Target:  5'- aGGUCGGCC-CCCAGGuGGCUGGCaGCCu -3'
miRNA:   3'- -CCGGCUGGuGGGUCU-UUGGCCGgCGG- -5'
11463 5' -60 NC_003085.1 + 45240 0.68 0.381386
Target:  5'- cGGCUGA-CGCUCAGcguAACCcGCCGCg -3'
miRNA:   3'- -CCGGCUgGUGGGUCu--UUGGcCGGCGg -5'
11463 5' -60 NC_003085.1 + 45158 0.75 0.129439
Target:  5'- uGCCaACCugcACCCGGAGACCGGgUGCUg -3'
miRNA:   3'- cCGGcUGG---UGGGUCUUUGGCCgGCGG- -5'
11463 5' -60 NC_003085.1 + 44294 0.68 0.348088
Target:  5'- uGCCuuCCGCgCCAGGA--UGGCCGCUg -3'
miRNA:   3'- cCGGcuGGUG-GGUCUUugGCCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.