miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11471 3' -59.6 NC_003085.1 + 34952 0.67 0.369301
Target:  5'- uGCUGGCcGGC---GGAGGCG-CCUCa -3'
miRNA:   3'- -CGACCGuCCGcaaCCUCCGUaGGGGg -5'
11471 3' -59.6 NC_003085.1 + 35003 0.68 0.34431
Target:  5'- uGCUGGCcgAGGCucUGGAGGCAaggaagaagCCCa- -3'
miRNA:   3'- -CGACCG--UCCGcaACCUCCGUa--------GGGgg -5'
11471 3' -59.6 NC_003085.1 + 36468 0.73 0.149622
Target:  5'- uGCggGGUAGGUGUUGGAGGUAgccagggcacggagcUCUgCCg -3'
miRNA:   3'- -CGa-CCGUCCGCAACCUCCGU---------------AGGgGG- -5'
11471 3' -59.6 NC_003085.1 + 36915 0.71 0.203744
Target:  5'- --cGGCcagcGGCGcgGGuGGCAUCCCUCu -3'
miRNA:   3'- cgaCCGu---CCGCaaCCuCCGUAGGGGG- -5'
11471 3' -59.6 NC_003085.1 + 37899 0.66 0.461093
Target:  5'- cGCgGGCAGgacgguGCGUUGGc-GCAggCCCCg -3'
miRNA:   3'- -CGaCCGUC------CGCAACCucCGUagGGGG- -5'
11471 3' -59.6 NC_003085.1 + 38142 0.69 0.305416
Target:  5'- cGCccuGCuGGCGUUGGugguGGCGcUCCCCg -3'
miRNA:   3'- -CGac-CGuCCGCAACCu---CCGU-AGGGGg -5'
11471 3' -59.6 NC_003085.1 + 38679 0.66 0.470928
Target:  5'- cGCUGcGCGGaaGa-GGuGGCAUgCCCCCa -3'
miRNA:   3'- -CGAC-CGUCcgCaaCCuCCGUA-GGGGG- -5'
11471 3' -59.6 NC_003085.1 + 39683 0.71 0.21464
Target:  5'- aGCa-GCAGGCGcUGGAGGCucGUCUCuCCg -3'
miRNA:   3'- -CGacCGUCCGCaACCUCCG--UAGGG-GG- -5'
11471 3' -59.6 NC_003085.1 + 40997 0.72 0.197958
Target:  5'- gGCUGGCccagcGGCGUcgucaucgccgUGGGcgucgcuGGCGUCCUCCu -3'
miRNA:   3'- -CGACCGu----CCGCA-----------ACCU-------CCGUAGGGGG- -5'
11471 3' -59.6 NC_003085.1 + 42743 0.69 0.283743
Target:  5'- gGCgauGCGGGCGcggUGGAcGGCAUCCaucgCCg -3'
miRNA:   3'- -CGac-CGUCCGCa--ACCU-CCGUAGGg---GG- -5'
11471 3' -59.6 NC_003085.1 + 43626 0.68 0.352503
Target:  5'- uGCaGaGCGGGCacgGGAGGCcAUCCgCCu -3'
miRNA:   3'- -CGaC-CGUCCGcaaCCUCCG-UAGGgGG- -5'
11471 3' -59.6 NC_003085.1 + 46423 0.69 0.290829
Target:  5'- uCUGGCGGGCGagUGGAGuaGUggaCCUCg -3'
miRNA:   3'- cGACCGUCCGCa-ACCUCcgUAg--GGGG- -5'
11471 3' -59.6 NC_003085.1 + 49295 0.68 0.336254
Target:  5'- uGCUGcgucGCGucGGCGUcccgGGAGGCGaCCuCCCa -3'
miRNA:   3'- -CGAC----CGU--CCGCAa---CCUCCGUaGG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.