miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11473 3' -56.5 NC_003085.1 + 46109 0.67 0.622321
Target:  5'- -gGGCucacgGGCGUCGGGGagcgucgucuguGCGGCGACCa -3'
miRNA:   3'- cgCUG-----CUGCGGCUCCau----------CGCUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 180 0.67 0.615867
Target:  5'- cGCGACGcaGCaGCCacagGGGGUGGCcAUGACg -3'
miRNA:   3'- -CGCUGC--UG-CGG----CUCCAUCGcUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 3382 0.67 0.615867
Target:  5'- aGCGGCu-CGCCGucGGUaAGCG-CGACg -3'
miRNA:   3'- -CGCUGcuGCGGCu-CCA-UCGCuGCUGg -5'
11473 3' -56.5 NC_003085.1 + 5168 0.67 0.615867
Target:  5'- aGCGGCcauccuGGCGCgGaAGGcagGGCGGCG-CCg -3'
miRNA:   3'- -CGCUG------CUGCGgC-UCCa--UCGCUGCuGG- -5'
11473 3' -56.5 NC_003085.1 + 28140 0.67 0.614791
Target:  5'- uGCGGcCGACGCUgcucucuGAGaGU-GCGACGcCCu -3'
miRNA:   3'- -CGCU-GCUGCGG-------CUC-CAuCGCUGCuGG- -5'
11473 3' -56.5 NC_003085.1 + 32700 0.67 0.614791
Target:  5'- cGCGuCGucugguaGCGCUcGGGUAGCGACaacaACCg -3'
miRNA:   3'- -CGCuGC-------UGCGGcUCCAUCGCUGc---UGG- -5'
11473 3' -56.5 NC_003085.1 + 8798 0.67 0.605122
Target:  5'- cCGGCGGCuCCgcGAGGUugcGCGGCGcaGCCa -3'
miRNA:   3'- cGCUGCUGcGG--CUCCAu--CGCUGC--UGG- -5'
11473 3' -56.5 NC_003085.1 + 22723 0.67 0.605122
Target:  5'- gGCGGCGGCuGCCGAGa-AGCacuCGGCUc -3'
miRNA:   3'- -CGCUGCUG-CGGCUCcaUCGcu-GCUGG- -5'
11473 3' -56.5 NC_003085.1 + 14049 0.67 0.605122
Target:  5'- cGCGACGGCGUguccguCGAGGccaucuGCGAgcGCCu -3'
miRNA:   3'- -CGCUGCUGCG------GCUCCau----CGCUgcUGG- -5'
11473 3' -56.5 NC_003085.1 + 26468 0.67 0.59547
Target:  5'- uGCGGCGcGCGCaccucuggcugcuugGGGGUGGCaGACugGGCCg -3'
miRNA:   3'- -CGCUGC-UGCGg--------------CUCCAUCG-CUG--CUGG- -5'
11473 3' -56.5 NC_003085.1 + 32178 0.67 0.5944
Target:  5'- -aGGCuGCGCCaGuGGUGGCGcGCGugCu -3'
miRNA:   3'- cgCUGcUGCGG-CuCCAUCGC-UGCugG- -5'
11473 3' -56.5 NC_003085.1 + 5600 0.67 0.593329
Target:  5'- uGCgGACGAUGCUGAgugacgcGGUGGUgGACGGgCu -3'
miRNA:   3'- -CG-CUGCUGCGGCU-------CCAUCG-CUGCUgG- -5'
11473 3' -56.5 NC_003085.1 + 7089 0.67 0.590118
Target:  5'- cGCGcucAUGcCGCCGAGGgcaugcgcgagcgGGCGGCGAa- -3'
miRNA:   3'- -CGC---UGCuGCGGCUCCa------------UCGCUGCUgg -5'
11473 3' -56.5 NC_003085.1 + 18243 0.67 0.583707
Target:  5'- gGCGAC-ACGCCGAuGUccgaGGCGAU-ACCg -3'
miRNA:   3'- -CGCUGcUGCGGCUcCA----UCGCUGcUGG- -5'
11473 3' -56.5 NC_003085.1 + 16993 0.67 0.583707
Target:  5'- --cGCGACGCCGAc--GGCGACGAg- -3'
miRNA:   3'- cgcUGCUGCGGCUccaUCGCUGCUgg -5'
11473 3' -56.5 NC_003085.1 + 34960 0.68 0.562447
Target:  5'- gGCGGaGGCGCCucacAGGaAGcCGAUGACCu -3'
miRNA:   3'- -CGCUgCUGCGGc---UCCaUC-GCUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 16161 0.68 0.562447
Target:  5'- aUGACcguGACGCCGuGGUGGCcGCG-CUg -3'
miRNA:   3'- cGCUG---CUGCGGCuCCAUCGcUGCuGG- -5'
11473 3' -56.5 NC_003085.1 + 20805 0.68 0.559275
Target:  5'- uGgGAgGAgguUGCCGGGGUGGaCGccauccuggaugagGCGACCg -3'
miRNA:   3'- -CgCUgCU---GCGGCUCCAUC-GC--------------UGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 15707 0.68 0.556108
Target:  5'- gGCGACacgcucaacgacaugGACGCgGuGGaUGGgGAUGACCc -3'
miRNA:   3'- -CGCUG---------------CUGCGgCuCC-AUCgCUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 8668 0.68 0.551894
Target:  5'- cGCGugGccuuggGCGCCGGGGUGcCGuCcGCCa -3'
miRNA:   3'- -CGCugC------UGCGGCUCCAUcGCuGcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.