Results 21 - 40 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11473 | 3' | -56.5 | NC_003085.1 | + | 3583 | 0.66 | 0.669611 |
Target: 5'- cGCGccuCGcUGCCGAGGcGGCGAacUGGCa -3' miRNA: 3'- -CGCu--GCuGCGGCUCCaUCGCU--GCUGg -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 4473 | 0.66 | 0.668541 |
Target: 5'- cGCGACGACGagGGcacGGUgacgaagcgcgcuGGCGACugGGCCa -3' miRNA: 3'- -CGCUGCUGCggCU---CCA-------------UCGCUG--CUGG- -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 7462 | 0.66 | 0.658891 |
Target: 5'- cCGACGcCGCCGGGGcAGgaacaCGGCGAg- -3' miRNA: 3'- cGCUGCuGCGGCUCCaUC-----GCUGCUgg -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 48736 | 0.66 | 0.658891 |
Target: 5'- aGCGGaGGCGaCUGAGGcgcGgGugGACCu -3' miRNA: 3'- -CGCUgCUGC-GGCUCCau-CgCugCUGG- -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 7277 | 0.66 | 0.658891 |
Target: 5'- aGCGcCucAUGCCGAGGcUGGCuGCGACg -3' miRNA: 3'- -CGCuGc-UGCGGCUCC-AUCGcUGCUGg -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 11408 | 0.66 | 0.658891 |
Target: 5'- gGCuGACGcacCGCCGcGGUGGCugcuucuACGGCCc -3' miRNA: 3'- -CG-CUGCu--GCGGCuCCAUCGc------UGCUGG- -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 25793 | 0.66 | 0.658891 |
Target: 5'- gGUGGgGACGCCGcugaAGG-AGUGGCcuGCCa -3' miRNA: 3'- -CGCUgCUGCGGC----UCCaUCGCUGc-UGG- -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 40695 | 0.66 | 0.658891 |
Target: 5'- gGgGACGACGUCcGGGU-GCugGACGcGCCg -3' miRNA: 3'- -CgCUGCUGCGGcUCCAuCG--CUGC-UGG- -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 621 | 0.66 | 0.648146 |
Target: 5'- -gGGCG-CGCuCGAGGcUGGCG-CgGACCu -3' miRNA: 3'- cgCUGCuGCG-GCUCC-AUCGCuG-CUGG- -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 3088 | 0.66 | 0.648146 |
Target: 5'- cGUGACGA-GCCGcAGGc--CGACGGCg -3' miRNA: 3'- -CGCUGCUgCGGC-UCCaucGCUGCUGg -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 25425 | 0.66 | 0.648146 |
Target: 5'- aCGGCaACgGCUGAGcagcacugAGCGGCGGCCg -3' miRNA: 3'- cGCUGcUG-CGGCUCca------UCGCUGCUGG- -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 28602 | 0.66 | 0.648146 |
Target: 5'- -gGAC-ACGCCGGuGGUguGGCGcucgcugcuGCGGCCg -3' miRNA: 3'- cgCUGcUGCGGCU-CCA--UCGC---------UGCUGG- -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 3164 | 0.66 | 0.64492 |
Target: 5'- uGgGAUGACGUgGAGGagGGCugacaugggcacucGACGACUc -3' miRNA: 3'- -CgCUGCUGCGgCUCCa-UCG--------------CUGCUGG- -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 37059 | 0.67 | 0.641692 |
Target: 5'- cGCGcUGGCGCCGAcgacgugcggaugcaGGUGGaCGGCGcGCa -3' miRNA: 3'- -CGCuGCUGCGGCU---------------CCAUC-GCUGC-UGg -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 16100 | 0.67 | 0.636312 |
Target: 5'- aCGAUGACGCUGAagggcgacauccuGGaGGuCGACGcCCg -3' miRNA: 3'- cGCUGCUGCGGCU-------------CCaUC-GCUGCuGG- -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 27650 | 0.67 | 0.634159 |
Target: 5'- aGCGG-GACGCCGcAucgccaccgacuacGGcGGCGACGugCu -3' miRNA: 3'- -CGCUgCUGCGGC-U--------------CCaUCGCUGCugG- -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 17157 | 0.67 | 0.626625 |
Target: 5'- cUGGCG-CGCUGAGGcGGaCGugGcCCa -3' miRNA: 3'- cGCUGCuGCGGCUCCaUC-GCugCuGG- -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 39652 | 0.67 | 0.626625 |
Target: 5'- cGCGACGACaCCGAGcGgcGCGcGCGugaGCa -3' miRNA: 3'- -CGCUGCUGcGGCUC-CauCGC-UGC---UGg -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 3663 | 0.67 | 0.626625 |
Target: 5'- gGUGGCGAgGuuGgAGGcAGgGACGGCg -3' miRNA: 3'- -CGCUGCUgCggC-UCCaUCgCUGCUGg -5' |
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11473 | 3' | -56.5 | NC_003085.1 | + | 2393 | 0.67 | 0.626625 |
Target: 5'- cGUGGcCGAcauggacacCGCCGAgcuGGUGGUGACGAa- -3' miRNA: 3'- -CGCU-GCU---------GCGGCU---CCAUCGCUGCUgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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